DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TfAP-2 and tnfrsf11b

DIOPT Version :9

Sequence 1:NP_001262178.1 Gene:TfAP-2 / 40398 FlyBaseID:FBgn0261953 Length:471 Species:Drosophila melanogaster
Sequence 2:XP_002938025.2 Gene:tnfrsf11b / 100494982 XenbaseID:XB-GENE-940091 Length:378 Species:Xenopus tropicalis


Alignment Length:92 Identity:19/92 - (20%)
Similarity:37/92 - (40%) Gaps:37/92 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   244 SEVFCAVPGRLS--------LLSSTSKYKVTIAEVQRRL----SPPECLNASLLGGVLRRAKSKN 296
            |::|    |||:        |:.|....|::..|::..:    .|.:.|.      :|...::||
 Frog   264 SKLF----GRLNVTVEQLRILMRSLPVKKISKDELETTVKLCSQPDQVLK------LLNLWRNKN 318

  Fly   297 GG---------------RLLREKLEKI 308
            ||               ::||..::|:
 Frog   319 GGNTISLLKVIKTNRLPKMLRRTIKKL 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TfAP-2NP_001262178.1 TF_AP-2 247..441 CDD:397406 18/89 (20%)
tnfrsf11bXP_002938025.2 TNFRSF 7..142 CDD:389949
CRD2 55..95 CDD:276900
TNFRSF 112..185 CDD:276900
CRD2 135..175 CDD:276900
DD 275..340 CDD:387368 12/70 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3811
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.