DRSC/TRiP Functional Genomics Resources

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Protein Alignment EMC10 and SMC5

DIOPT Version :9

Sequence 1:NP_730662.2 Gene:EMC10 / 40396 FlyBaseID:FBgn0052441 Length:227 Species:Drosophila melanogaster
Sequence 2:NP_014608.1 Gene:SMC5 / 854123 SGDID:S000005394 Length:1093 Species:Saccharomyces cerevisiae


Alignment Length:180 Identity:39/180 - (21%)
Similarity:64/180 - (35%) Gaps:70/180 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 TIPSLNSGLANVEQPDLSTADLD-----------LLKKLALGNEFYRLKATVVYSNGAKAQFITS 104
            |||        |.:.:|:.|.:.           |.|::..||....:|.:   :.|:|..|.|.
Yeast   584 TIP--------VSRRELTPAQIKKLITPRPNGKILFKRIIHGNRLVDIKQS---AYGSKQVFPTD 637

  Fly   105 NKACRLLQAQLNDVLWVSLEPSGYVTGITVSQDTAPATIECTQEDVNKLLETQF-----STDVL- 163
                            ||::.:.:..|..:|.:   ..|....|.:|  |:.::     :.|.| 
Yeast   638 ----------------VSIKQTNFYQGSIMSNE---QKIRIENEIIN--LKNEYNDRKSTLDALS 681

  Fly   164 -----IRH--AELAPVPDTAGFIQKVEREREARERGEVRDNRGFFAKYWM 206
                 .||  :|||...|        :..|||.:..|:|      .||.|
Yeast   682 NQKSGYRHELSELASKND--------DINREAHQLNEIR------KKYTM 717

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EMC10NP_730662.2 None
SMC5NP_014608.1 Smc 42..1069 CDD:224117 39/180 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1196
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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