DRSC/TRiP Functional Genomics Resources

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Protein Alignment EMC10 and si:dkey-119f1.1

DIOPT Version :9

Sequence 1:NP_730662.2 Gene:EMC10 / 40396 FlyBaseID:FBgn0052441 Length:227 Species:Drosophila melanogaster
Sequence 2:NP_001121806.1 Gene:si:dkey-119f1.1 / 557127 ZFINID:ZDB-GENE-070705-287 Length:1090 Species:Danio rerio


Alignment Length:188 Identity:40/188 - (21%)
Similarity:66/188 - (35%) Gaps:60/188 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 W-GFLEHDSWITVELQHSLAANSESFSFRGNVTIPSLNSGLANVEQ--PDLSTADLDLLKKLA-- 79
            | |.::..:.|:.:||..|    ||.|.|.....|..:...:.|::  .:|.||:..|.:|..  
Zfish   318 WKGKVDEANKISKQLQDQL----ESVSERMQQLQPECSELKSRVQERNRELKTAEAALHRKRTNL 378

  Fly    80 ---------LGNEFYRLKATVVYSNGAKAQFITSNKACRLLQAQLNDVLWVSLEPSGYVTGITVS 135
                     |......||.::...|.|..|  ...:....:||:|.:   :|...|      |::
Zfish   379 RDLEKDKDQLNKRIKELKHSISQMNSADTQ--ARVEKMNHIQAELEE---LSFRDS------TLA 432

  Fly   136 Q--DTAPATIECTQEDVNKLLETQFSTDVLIRHAELAPVPDTAGFIQKVEREREARER 191
            |  |......|..:|                |||             ::.|||:..:|
Zfish   433 QQIDQFKQACESAKE----------------RHA-------------RMSRERQDLQR 461

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
EMC10NP_730662.2 None
si:dkey-119f1.1NP_001121806.1 Smc 52..1074 CDD:224117 40/188 (21%)
ABC_SMC6_euk 52..>208 CDD:213243