DRSC/TRiP Functional Genomics Resources

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Protein Alignment EMC10 and Smc4

DIOPT Version :9

Sequence 1:NP_730662.2 Gene:EMC10 / 40396 FlyBaseID:FBgn0052441 Length:227 Species:Drosophila melanogaster
Sequence 2:NP_001032262.2 Gene:Smc4 / 295107 RGDID:1306680 Length:1286 Species:Rattus norvegicus


Alignment Length:148 Identity:36/148 - (24%)
Similarity:64/148 - (43%) Gaps:36/148 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 VEQPDLSTADLDLLKKLALGNE------FYRLKATVVYSNGAKAQFITSNKACR----LLQAQLN 116
            ::.|:.:....||:|   :.||      ::.|:.|:|.:|..:|..:...:..|    .||.|: 
  Rat   682 IQTPENTPRLFDLVK---VKNEEIRQAFYFALRDTLVANNLDQATRVAYQRDRRWRVVTLQGQI- 742

  Fly   117 DVLWVSLEPSGYVTG----ITVSQDTAPATIECTQEDVNKLLETQFSTDVLIRHAELA------P 171
                  :|.||.:||    :...:..:....|.:.|:||| :|.|     |.||::.|      .
  Rat   743 ------IEQSGTMTGGGSKVMRGRMGSSVVDEISVEEVNK-MECQ-----LERHSKQAAQVQEQK 795

  Fly   172 VPDTAGFIQKVEREREAR 189
            |......::..:.|||.|
  Rat   796 VQHEEAIVKLKQSEREMR 813

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EMC10NP_730662.2 None
Smc4NP_001032262.2 ABC_SMC4_euk 80..>239 CDD:213241
SMC_N 81..1272 CDD:280601 36/148 (24%)
BAR <335..>414 CDD:299863
SMC_hinge 611..725 CDD:214944 11/45 (24%)
ABC_SMC4_euk <1179..1273 CDD:213241
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1196
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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