DRSC/TRiP Functional Genomics Resources

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Protein Alignment EMC10 and Smc1a

DIOPT Version :9

Sequence 1:NP_730662.2 Gene:EMC10 / 40396 FlyBaseID:FBgn0052441 Length:227 Species:Drosophila melanogaster
Sequence 2:NP_062684.2 Gene:Smc1a / 24061 MGIID:1344345 Length:1233 Species:Mus musculus


Alignment Length:55 Identity:11/55 - (20%)
Similarity:28/55 - (50%) Gaps:9/55 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 TIECTQEDVNKLLETQFSTDVLIRHAELAPVPDTAGFIQKVEREREARERGEVRD 196
            |::..:.::.||.:.:      .||.::  :.:|...:|.::.:..|: :.||.|
Mouse   841 TVKKDENEIEKLKKEE------QRHMKI--IDETMAQLQDLKNQHLAK-KSEVND 886

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EMC10NP_730662.2 None
Smc1aNP_062684.2 SMC_N 3..1210 CDD:308206 11/55 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 284..308
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 348..369
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 947..969
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1196
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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