DRSC/TRiP Functional Genomics Resources

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Protein Alignment EMC10 and Smc5

DIOPT Version :9

Sequence 1:NP_730662.2 Gene:EMC10 / 40396 FlyBaseID:FBgn0052441 Length:227 Species:Drosophila melanogaster
Sequence 2:XP_006527043.1 Gene:Smc5 / 226026 MGIID:2385088 Length:1102 Species:Mus musculus


Alignment Length:123 Identity:34/123 - (27%)
Similarity:53/123 - (43%) Gaps:32/123 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 LKKLALGNEFYRLKATVVYSNGAKAQFITSNKACRLLQAQLNDVLWVSLEPSGYVTGITVSQDTA 139
            ||::....|.|.|| |.||||    :.|:||.:.::.|.                  :||:.|..
Mouse   609 LKQIYTAEEKYVLK-TSVYSN----KVISSNTSLKVAQF------------------LTVTVDLE 650

  Fly   140 PAT-IECTQEDVNKLLETQFSTDVLI----RHAELAPVPDTAGFIQKVE-REREARER 191
            ... :|...:::|:.||...|....:    ||.||   .|....::|.| .||:.|:|
Mouse   651 QRRHLEEQLKEMNRQLEAVDSGLAALRDTNRHLEL---KDNELRLKKKELLERKTRKR 705

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EMC10NP_730662.2 None
Smc5XP_006527043.1 ABC_SMC5_euk 51..>196 CDD:213244
Smc 53..1056 CDD:224117 34/123 (28%)
ABC_SMC5_euk <976..1078 CDD:213244
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1196
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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