DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment EMC10 and dpy-27

DIOPT Version :9

Sequence 1:NP_730662.2 Gene:EMC10 / 40396 FlyBaseID:FBgn0052441 Length:227 Species:Drosophila melanogaster
Sequence 2:NP_497771.1 Gene:dpy-27 / 175492 WormBaseID:WBGene00001086 Length:1469 Species:Caenorhabditis elegans


Alignment Length:63 Identity:13/63 - (20%)
Similarity:26/63 - (41%) Gaps:0/63 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 VTGITVSQDTAPATIECTQEDVNKLLETQFSTDVLIRHAELAPVPDTAGFIQKVEREREARER 191
            :.|.|.:....|..:|.....:.|:.|.:......:|.||:.|..|.:..:..|....:.::|
 Worm  1324 IDGKTYNIMVDPIAVEIKNRPILKIFEEEIKRREKLRRAEIEPEIDLSNGLSNVVIAPKRKQR 1386

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EMC10NP_730662.2 None
dpy-27NP_497771.1 Smc 91..1322 CDD:224117
P-loop_NTPase 91..>247 CDD:304359
SMC_hinge 620..736 CDD:284001
P-loop_NTPase <1235..1331 CDD:304359 2/6 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1196
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.