DRSC/TRiP Functional Genomics Resources

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Protein Alignment CapaR and Ghsr

DIOPT Version :9

Sequence 1:NP_996140.1 Gene:CapaR / 40393 FlyBaseID:FBgn0037100 Length:477 Species:Drosophila melanogaster
Sequence 2:NP_114464.1 Gene:Ghsr / 84022 RGDID:621397 Length:364 Species:Rattus norvegicus


Alignment Length:324 Identity:110/324 - (33%)
Similarity:171/324 - (52%) Gaps:26/324 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 LGPQTLPLYKAVL---ITIIFGGIFITGVVGNLLVCIVIIRHSAMHTATNYYLFSLAVSDLLYLL 119
            |..:.|||:.|.|   :|.....:|:.|:.||||..:|:.|...:.|.||.||.|:|.||||..|
  Rat    29 LPDELLPLFPAPLLAGVTATCVALFVVGISGNLLTMLVVSRFRELRTTTNLYLSSMAFSDLLIFL 93

  Fly   120 FGLPTEVFLYWHQYPDLFGMPFCKIRAFISEACTYVSVFTIVAFSMERFLAICHPLHLYAMVGFK 184
            . :|.::...|...|..||...||:..|:||:|||.:|.||.|.|:||:.|||.||....:|...
  Rat    94 C-MPLDLVRLWQYRPWNFGDLLCKLFQFVSESCTYATVLTITALSVERYFAICFPLRAKVVVTKG 157

  Fly   185 RAIRIITALWIVSFISAIPFGLLSDIQYLN--YPLDHSRIEESAFCSMSPKIVNEIPVFEVSFCI 247
            |...:|..:|.|:|.||.|..:|..:::.|  .|.|.:....:.|...|..:...:.|..|    
  Rat   158 RVKLVILVIWAVAFCSAGPIFVLVGVEHENGTDPRDTNECRATEFAVRSGLLTVMVWVSSV---- 218

  Fly   248 FFVIPMILIILLYGRMGAKI-RSRTNQKLGVQQGTNNRETRNSQMRKKTVIRMLAAVVITFFVCW 311
            ||.:|:..:.:||..:|.|: |.|.:..:|......|.         |..::|||.||..|.:||
  Rat   219 FFFLPVFCLTVLYSLIGRKLWRRRGDAAVGASLRDQNH---------KQTVKMLAVVVFAFILCW 274

  Fly   312 FPFHLQRLIFLYAKNMD----NYLDINEALFSIAGFAYYVSCTVNPIVYSVMSRRYRVAFRELL 371
            .|||:.|  :|::|:.:    ....|::....::...:|:|..:|||:|::||::||||..:||
  Rat   275 LPFHVGR--YLFSKSFEPGSLEIAQISQYCNLVSFVLFYLSAAINPILYNIMSKKYRVAVFKLL 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CapaRNP_996140.1 7tm_4 85..374 CDD:304433 101/294 (34%)
7tm_1 85..356 CDD:278431 92/277 (33%)
GhsrNP_114464.1 7tmA_GHSR 44..332 CDD:320259 101/303 (33%)
TM helix 1 45..69 CDD:320259 8/23 (35%)
TM helix 2 78..99 CDD:320259 11/21 (52%)
TM helix 3 116..138 CDD:320259 11/21 (52%)
TM helix 4 161..177 CDD:320259 6/15 (40%)
TM helix 5 209..232 CDD:320259 6/26 (23%)
TM helix 6 260..282 CDD:320259 12/23 (52%)
TM helix 7 300..325 CDD:320259 6/24 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D380940at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24243
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.020

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