DRSC/TRiP Functional Genomics Resources

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Protein Alignment CapaR and Ghsr

DIOPT Version :10

Sequence 1:NP_996140.1 Gene:CapaR / 40393 FlyBaseID:FBgn0037100 Length:477 Species:Drosophila melanogaster
Sequence 2:NP_114464.1 Gene:Ghsr / 84022 RGDID:621397 Length:364 Species:Rattus norvegicus


Alignment Length:324 Identity:110/324 - (33%)
Similarity:171/324 - (52%) Gaps:26/324 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 LGPQTLPLYKAVL---ITIIFGGIFITGVVGNLLVCIVIIRHSAMHTATNYYLFSLAVSDLLYLL 119
            |..:.|||:.|.|   :|.....:|:.|:.||||..:|:.|...:.|.||.||.|:|.||||..|
  Rat    29 LPDELLPLFPAPLLAGVTATCVALFVVGISGNLLTMLVVSRFRELRTTTNLYLSSMAFSDLLIFL 93

  Fly   120 FGLPTEVFLYWHQYPDLFGMPFCKIRAFISEACTYVSVFTIVAFSMERFLAICHPLHLYAMVGFK 184
            . :|.::...|...|..||...||:..|:||:|||.:|.||.|.|:||:.|||.||....:|...
  Rat    94 C-MPLDLVRLWQYRPWNFGDLLCKLFQFVSESCTYATVLTITALSVERYFAICFPLRAKVVVTKG 157

  Fly   185 RAIRIITALWIVSFISAIPFGLLSDIQYLN--YPLDHSRIEESAFCSMSPKIVNEIPVFEVSFCI 247
            |...:|..:|.|:|.||.|..:|..:::.|  .|.|.:....:.|...|..:...:.|..|    
  Rat   158 RVKLVILVIWAVAFCSAGPIFVLVGVEHENGTDPRDTNECRATEFAVRSGLLTVMVWVSSV---- 218

  Fly   248 FFVIPMILIILLYGRMGAKI-RSRTNQKLGVQQGTNNRETRNSQMRKKTVIRMLAAVVITFFVCW 311
            ||.:|:..:.:||..:|.|: |.|.:..:|......|.         |..::|||.||..|.:||
  Rat   219 FFFLPVFCLTVLYSLIGRKLWRRRGDAAVGASLRDQNH---------KQTVKMLAVVVFAFILCW 274

  Fly   312 FPFHLQRLIFLYAKNMD----NYLDINEALFSIAGFAYYVSCTVNPIVYSVMSRRYRVAFRELL 371
            .|||:.|  :|::|:.:    ....|::....::...:|:|..:|||:|::||::||||..:||
  Rat   275 LPFHVGR--YLFSKSFEPGSLEIAQISQYCNLVSFVLFYLSAAINPILYNIMSKKYRVAVFKLL 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CapaRNP_996140.1 7tmA_capaR 83..367 CDD:320262 98/290 (34%)
TM helix 2 103..129 CDD:320262 12/25 (48%)
TM helix 3 142..172 CDD:320262 16/29 (55%)
TM helix 4 184..206 CDD:320262 8/21 (38%)
TM helix 5 237..266 CDD:320262 8/28 (29%)
TM helix 6 291..321 CDD:320262 13/29 (45%)
TM helix 7 335..360 CDD:320262 6/24 (25%)
GhsrNP_114464.1 7tmA_GHSR 44..332 CDD:320259 101/303 (33%)
TM helix 1 44..70 CDD:320259 8/25 (32%)
TM helix 2 77..102 CDD:320259 12/25 (48%)
TM helix 3 115..145 CDD:320259 16/29 (55%)
TM helix 4 157..179 CDD:320259 8/21 (38%)
TM helix 5 208..237 CDD:320259 8/32 (25%)
TM helix 6 254..284 CDD:320259 14/40 (35%)
TM helix 7 300..325 CDD:320259 6/24 (25%)

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