DRSC/TRiP Functional Genomics Resources

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Protein Alignment CapaR and srw-123

DIOPT Version :9

Sequence 1:NP_996140.1 Gene:CapaR / 40393 FlyBaseID:FBgn0037100 Length:477 Species:Drosophila melanogaster
Sequence 2:NP_001023706.1 Gene:srw-123 / 3565663 WormBaseID:WBGene00005870 Length:365 Species:Caenorhabditis elegans


Alignment Length:339 Identity:86/339 - (25%)
Similarity:139/339 - (41%) Gaps:77/339 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 IFITGVVGNLLVCIVIIRHSAMHTATNYYLFSLAVSDLLYLLFGLPTEVFLYWHQYPDLF----- 137
            |.|:.::.||:...::.|.....::.|..:.::|..|:...|  ||.||.  :.:|.|:|     
 Worm    45 ISISSILINLVHFFILTRKPMRTSSINILMAAVAFFDIFTSL--LPIEVL--FERYKDIFFECLS 105

  Fly   138 ----GMPFCKIRAFI----SEACTYVSVFTIVAFSMERFLAICHPL-HLYAMVGF-KRAIRIITA 192
                |:...|....:    |..|:...:| .:||.  |.|.|.:|| ..|..:|. |.:|.:||.
 Worm   106 LDTYGLVLTKALLTVVKDYSRRCSTWLIF-FIAFI--RTLIIQNPLSSKYEALGKPKASIIVITG 167

  Fly   193 LWIVSF-ISAIPFGLLSDIQYLNYPLDHSRIEESAFCSMSPK---IVNEIP-------------- 239
            :.:|:. ||...|            |::..:|.....|.:|.   |||.:.              
 Worm   168 ICVVTLPISMFKF------------LENQFVESMPRDSCAPNTTYIVNVLSELFMKNDGIVMKYF 220

  Fly   240 -VFEVSFCIFFVIPMILI----ILLYGRMGAKIRSRTNQKLGVQQGTNNRETRNSQMRKKTVIRM 299
             :|..|  |..:||.||:    |||...:....:.||.    :...:|||.:|...       .:
 Worm   221 YLFNSS--ISDIIPCILLLIVTILLVWNLFKTSKKRTK----ISSVSNNRNSRGKS-------GL 272

  Fly   300 LAAVVITFFVCWFPFHL---QRLIFLYAKNMDNYLDINEALFSIAGFAYYVSCTVNPIVYSVMSR 361
            :..|.|.|||...|:.|   ...||::|....|.|:...|:||:  .....:|| :.||...||.
 Worm   273 VLCVAIMFFVVECPYGLSVGSAWIFIHAPGAHNMLNQFGAIFSM--LITLNTCT-HLIVCLFMSS 334

  Fly   362 RYR-VAFRELLCGK 374
            :|| ...:...||:
 Worm   335 QYRSTTIQVFSCGR 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CapaRNP_996140.1 7tm_4 85..374 CDD:304433 83/330 (25%)
7tm_1 85..356 CDD:278431 77/311 (25%)
srw-123NP_001023706.1 7TM_GPCR_Srw 45..347 CDD:370978 84/336 (25%)
TM helix 2 71..93 CDD:320109 8/25 (32%)
TM helix 3 116..138 CDD:320109 3/22 (14%)
TM helix 4 163..179 CDD:320109 5/15 (33%)
TM helix 5 218..241 CDD:320109 7/24 (29%)
TM helix 6 272..292 CDD:320109 7/19 (37%)
TM helix 7 308..333 CDD:320109 7/27 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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