DRSC/TRiP Functional Genomics Resources

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Protein Alignment CapaR and Gpr39

DIOPT Version :9

Sequence 1:NP_996140.1 Gene:CapaR / 40393 FlyBaseID:FBgn0037100 Length:477 Species:Drosophila melanogaster
Sequence 2:NP_001107864.1 Gene:Gpr39 / 288995 RGDID:1306745 Length:456 Species:Rattus norvegicus


Alignment Length:436 Identity:103/436 - (23%)
Similarity:189/436 - (43%) Gaps:65/436 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 VLITIIFGGIFITGVVGN---LLVCIVIIRHSAMHTATNYYLFSLAVSDLLYLLFGLPTEVF-LY 129
            :.:|:::..:|:.|::||   :.|..|:.:...:......::.|||.||:|..|.|:|.|.: :.
  Rat    31 ITLTLVYLIVFVVGILGNSVTIRVTQVLQKKGYLQKEVTDHMISLACSDILVFLIGMPMEFYSII 95

  Fly   130 WHQYPDLFGMPFCKIRAFISEACTYVSVFTIVAFSMERFLAICHPLHLYAMVGFKRAIRIITALW 194
            |:..........||:..|:.|.|:|.::..::..|.||::|||||.....:.|..:...:|..:|
  Rat    96 WNPLTTPSYALSCKLHTFLFETCSYATLLHVLTLSFERYIAICHPFRYKDVSGPCQVKLLIGFVW 160

  Fly   195 IVSFISAIPFGLLSDIQYLNYPLDHSRIEESAFCSMSPKIVNEIP----------------VFEV 243
            :.|.:.|:|......|:   |||.:....:...|::|....::.|                ||:.
  Rat   161 VTSALVALPLLFAMGIE---YPLANVPTHKGLNCNLSRTRHHDHPGDSNMSICTNLSSRWEVFQS 222

  Fly   244 S----FCIFFVIPMILIILLYGRMGAKIRSR--TNQKLGVQQGTNNRETRNSQMRKKTVIRMLAA 302
            |    |.::.|:.:.:..:.:..|...::|:  |....|.|......|:..|:..::..|..|..
  Rat   223 SIFGAFAVYLVVLVSVAFMCWNMMKVLMKSKRGTLAGTGPQLQLRKSESEESRTARRQTIIFLRL 287

  Fly   303 VVITFFVCWFPFHLQRLIFLYAKNMD---NYLDINEALFSIAGFAYYVSCTVNPIVYSVMSRRYR 364
            :|:|..|||.|..::|::.......|   :|......|...:...:|:|..|||::|:|.|:::|
  Rat   288 IVVTLAVCWMPNQIRRIMAAAKPKHDWTKSYFKAYMILLPFSDTFFYLSSVVNPLLYNVSSQQFR 352

  Fly   365 VAFRELLC----------GKAVGAYYNSGFARDHSSFRESSAYDRVHSVHVRASQHPNKFETDSS 419
            ..|.::||          .|...||:        ||.:.||...|...:.: ||:..|   :.|.
  Rat   353 KVFWQVLCCRLTLQHANQEKQQRAYF--------SSTKNSSRSARSPLIFL-ASRRSN---SSSR 405

  Fly   420 SANRVLIKKTYSL----------PLPKNADSTVLSTTDIVIVLENS 455
            ..|:|.: .|:..          ||...:..|...|.......|||
  Rat   406 RTNKVFL-STFQAEAKPLEGEHQPLSPESPQTGSETKPAGSATENS 450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CapaRNP_996140.1 7tm_4 85..374 CDD:304433 78/327 (24%)
7tm_1 85..356 CDD:278431 71/299 (24%)
Gpr39NP_001107864.1 7tm_1 47..344 CDD:278431 71/299 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D380940at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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