DRSC/TRiP Functional Genomics Resources

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Protein Alignment CapaR and srw-83

DIOPT Version :9

Sequence 1:NP_996140.1 Gene:CapaR / 40393 FlyBaseID:FBgn0037100 Length:477 Species:Drosophila melanogaster
Sequence 2:NP_001346695.1 Gene:srw-83 / 266935 WormBaseID:WBGene00005830 Length:382 Species:Caenorhabditis elegans


Alignment Length:403 Identity:84/403 - (20%)
Similarity:138/403 - (34%) Gaps:136/403 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 TLPLYK--------AVLITIIFGGIFITGVVGNLLVCIVIIRHSAMHTATNYYLFSLAVSDLLYL 118
            |.|::|        |.|..::...:.|...:.|:....::.|.|.....||..:..::::|::.|
 Worm     5 TDPVFKTYCEWGNFATLTQLVEFVVAILAFLMNIPHLFILTRKSMRTHITNSLMIGISIADMITL 69

  Fly   119 LFGLPTEVFLYW---------HQYPDLFGMPFCKIRAFISEACTYVSVFTIVAFSMERFLAICHP 174
            ...:...:::.|         |.||.:              ...||     :..|||..:.:.:.
 Worm    70 FMIINNRIYVTWLSPYDCFNFHNYPMI--------------VARYV-----LEISMESMMRVSYY 115

  Fly   175 LHL-YAMV------------GFKRAIR---IITALWIVSFISAIPFGLLSDIQYLNYPL--DHSR 221
            |.| .|::            ||....|   .:|...|:  ||.    |:|...:..|.:  :...
 Worm   116 LGLCLALIRCIIMKMSRNAPGFLSTTRNGYFLTLFLII--IST----LISCSYFYGYKIIKEKEP 174

  Fly   222 IEESAFCSMSPKIVNE------------IP--VFEV-------SF-CIFFVIP------------ 252
            ....|.|:..|...:|            ||  |:||       || |..|:..            
 Worm   175 FTPGANCTGFPAKYSEPNYNRVKKKNQLIPTDVYEVFTASSDASFQCGAFLFTYSVGKFYRTPPN 239

  Fly   253 -MILIILLYGRMG----------AKIRS-RTNQKLGVQQGTNNRETRNSQMRKKTVIRMLAA--- 302
             .|||..||...|          ||:.| ..::|..|::...:|     .:...|:..|||:   
 Worm   240 LKILIAALYPIFGLLLMFEVLKAAKVASTMLSRKDAVERYHTSR-----MILVMTIFYMLASCLT 299

  Fly   303 --------VVITFFVCWFPFHLQRLIFLYAKNMDNYLDINEALFSIAGFAYYVSCTVNPIVYSVM 359
                    :|.|.....|..:. .||..|..|:.:      |||.....|::       ::...|
 Worm   300 GTYKFVRLIVETISYTHFDMYF-NLILAYCSNLFS------ALFCANALAHF-------LINLSM 350

  Fly   360 SRRYRVAFRELLC 372
            ||.||.|..||.|
 Worm   351 SRNYRNAVMELGC 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CapaRNP_996140.1 7tm_4 85..374 CDD:304433 78/372 (21%)
7tm_1 85..356 CDD:278431 69/354 (19%)
srw-83NP_001346695.1 TM helix 1 24..47 CDD:341315 2/22 (9%)
7TM_GPCR_Srw 25..364 CDD:370978 79/383 (21%)
TM helix 2 54..81 CDD:341315 4/26 (15%)
TM helix 3 99..129 CDD:341315 8/34 (24%)
TM helix 4 142..162 CDD:341315 7/25 (28%)
TM helix 5 202..254 CDD:341315 15/51 (29%)
TM helix 6 281..310 CDD:341315 5/33 (15%)
TM helix 7 323..351 CDD:341315 8/40 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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