DRSC/TRiP Functional Genomics Resources

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Protein Alignment CapaR and dmsr-9

DIOPT Version :9

Sequence 1:NP_996140.1 Gene:CapaR / 40393 FlyBaseID:FBgn0037100 Length:477 Species:Drosophila melanogaster
Sequence 2:NP_504723.1 Gene:dmsr-9 / 260186 WormBaseID:WBGene00022606 Length:364 Species:Caenorhabditis elegans


Alignment Length:364 Identity:72/364 - (19%)
Similarity:139/364 - (38%) Gaps:80/364 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 PLYKAVLITIIFGGIFITGVVGNLLVCIVIIRHSAMHTATNYYLFSLAVSDLLYLLFGLPTEVF- 127
            |.:..:|.:::....|     .|:::.|||.:.....:..|..:..:||.|     ||...... 
 Worm    40 PYHYYILTSLVLFAFF-----ANIMIVIVISQKEMRSSGVNVTMMLIAVCD-----FGCSVSALA 94

  Fly   128 -LYWHQYPDLFGMPFCKIRAFISEACTYVSVFTIVAFSMERFLAICHPLHLYAMVG--FKRAIRI 189
             |....:.|.:.              :|::.:  ....::.|....|...||..||  |.|||.:
 Worm    95 QLLLRNFSDYYS--------------SYITAY--AQLIVDYFQIAFHASSLYLAVGMSFCRAISL 143

  Fly   190 ITA-----LW-------IVSFISAIP-FGLLSDIQYLNY--PLDHSRIEESAFCSMSP-KIVNEI 238
            :..     .|       .:..:..:| |.:.|...:|||  ..|.:.:.|   ..:|| .:.|..
 Worm   144 VLTKDTRDTWQSPRYALRLGIVLCLPVFFIASTNLFLNYVKEKDENGLVE---LEVSPLSVANSC 205

  Fly   239 PVFE----VSFCIFFVIPMILI----ILLYGRMGAKIRSRTNQKLGVQQ--GTNNRETRNSQMRK 293
            ...:    :|..:|.:||.||:    |::.|::.|          |.|:  ..:..::.|:|.:.
 Worm   206 WYMKFALVLSGSLFKIIPCILMSGLSIVILGKINA----------GKQRAIALSRSQSDNTQSKI 260

  Fly   294 KTVIRMLAAVVITFFVCWFPFHLQRLIFLYAKNMDNYLDINEALFSIAGFAYYVSCTVNPIVYSV 358
            ....|.:..::|.|.|..||.....::  ...::::|::..:..........|.:.|.:.|:||.
 Worm   261 DRSSRFIQCIIIIFVVTEFPQGFFSVV--GGLSINDYINYFQFFSVFTNLLAYFNTTTSFIIYST 323

  Fly   359 MSRRYRVAFRELLCGK----AVGAYYN-----SGFARDH 388
            :|.::|..|.:|...:    .:|...|     |.|...|
 Worm   324 LSSKFRKLFVQLFVPRFIKDRIGKSSNIVVVQSTFVESH 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CapaRNP_996140.1 7tm_4 85..374 CDD:304433 64/318 (20%)
7tm_1 85..356 CDD:278431 58/300 (19%)
dmsr-9NP_504723.1 7tmA_FMRFamide_R-like 40..332 CDD:320109 65/332 (20%)
TM helix 1 42..66 CDD:320109 6/28 (21%)
TM helix 2 75..97 CDD:320109 6/26 (23%)
TM helix 3 115..137 CDD:320109 6/21 (29%)
TM helix 4 161..177 CDD:320109 3/15 (20%)
TM helix 5 209..232 CDD:320109 6/22 (27%)
TM helix 6 261..286 CDD:320109 6/24 (25%)
TM helix 7 300..325 CDD:320109 5/24 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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