DRSC/TRiP Functional Genomics Resources

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Protein Alignment CapaR and Cckbr

DIOPT Version :10

Sequence 1:NP_996140.1 Gene:CapaR / 40393 FlyBaseID:FBgn0037100 Length:477 Species:Drosophila melanogaster
Sequence 2:NP_037297.2 Gene:Cckbr / 25706 RGDID:2290 Length:452 Species:Rattus norvegicus


Alignment Length:409 Identity:98/409 - (23%)
Similarity:158/409 - (38%) Gaps:120/409 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 ACGTFNCSPKEFVAFVLGPQTLPLYKAVLITIIFGGIFITGVVGNLLVCIVIIRHSAMHTATNYY 106
            :.|..:|.|..    :.|..|..|..|:.|| ::..||:..|.||:|:.:|:.....:.|.||.:
  Rat    33 SAGNLSCEPPR----IRGTGTRELEMAIRIT-LYAVIFLMSVGGNVLIIVVLGLSRRLRTVTNAF 92

  Fly   107 LFSLAVSDLLYLLFGLPTEVFLYWHQYPDL-----FGMPFCKIRAFISEACTYVSVFTIVAFSME 166
            |.||||||||..:..:|..:.      |:|     ||...||..:::......||...:||.::|
  Rat    93 LLSLAVSDLLLAVACMPFTLL------PNLMGTFIFGTVICKAISYLMGVSVSVSTLNLVAIALE 151

  Fly   167 RFLAICHPLHLYAMVGFKRAIRIITALWIVSFISAIPFGLLSDIQYLNYPLDHSRIEESAFCSMS 231
            |:.|||.||..........|.|:|.|.|::|.:..:|:.:.:.:|                 .:.
  Rat   152 RYSAICRPLQARVWQTRSHAARVILATWLLSGLLMVPYPVYTMVQ-----------------PVG 199

  Fly   232 PKI---VNEIPVFEVS-------FCIFFVIPMILIILLYGRMGAKI--------------RSRTN 272
            |::   ::..|...|.       ..:.|.||.::|.:.||.:..::              :||..
  Rat   200 PRVLQCMHRWPSARVQQTWSVLLLLLLFFIPGVVIAVAYGLISRELYLGLHFDGENDSETQSRAR 264

  Fly   273 QKLGVQQGT------------------------------------------------NNRETRNS 289
            .:.|:..|.                                                ..|..:..
  Rat   265 NQGGLPGGAAPGPVHQNGGCRPVTSVAGEDSDGCCVQLPRSRLEMTTLTTPTPGPVPGPRPNQAK 329

  Fly   290 QMRKKTVIRMLAAVVITFFVCWFPFHLQRLIFLYAKNMDNYLD-------INEALFSIAGFAYYV 347
            .:.||.|:|||..:|:.||:||.|        :|:.|.....|       ::.|..|......||
  Rat   330 LLAKKRVVRMLLVIVLLFFLCWLP--------VYSVNTWRAFDGPGAQRALSGAPISFIHLLSYV 386

  Fly   348 SCTVNPIVYSVMSRRYRVA 366
            |..|||:||..|.||:|.|
  Rat   387 SACVNPLVYCFMHRRFRQA 405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CapaRNP_996140.1 7tmA_capaR 83..367 CDD:320262 87/368 (24%)
TM helix 2 103..129 CDD:320262 12/25 (48%)
TM helix 3 142..172 CDD:320262 9/29 (31%)
TM helix 4 184..206 CDD:320262 7/21 (33%)
TM helix 5 237..266 CDD:320262 8/35 (23%)
TM helix 6 291..321 CDD:320262 12/29 (41%)
TM helix 7 335..360 CDD:320262 10/24 (42%)
CckbrNP_037297.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
7tm_GPCRs 55..406 CDD:475119 92/383 (24%)
TM helix 1 57..81 CDD:410628 9/24 (38%)
TM helix 2 90..112 CDD:410628 11/21 (52%)
TM helix 3 128..150 CDD:410628 5/21 (24%)
TM helix 4 173..189 CDD:410628 5/15 (33%)
TM helix 5 216..239 CDD:410628 4/22 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 257..286 4/28 (14%)
TM helix 6 337..359 CDD:410628 10/29 (34%)
TM helix 7 374..399 CDD:410628 10/24 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 421..452
Blue background indicates that the domain is not in the aligned region.

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