DRSC/TRiP Functional Genomics Resources

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Protein Alignment CapaR and Ghsr

DIOPT Version :9

Sequence 1:NP_996140.1 Gene:CapaR / 40393 FlyBaseID:FBgn0037100 Length:477 Species:Drosophila melanogaster
Sequence 2:XP_017175002.1 Gene:Ghsr / 208188 MGIID:2441906 Length:427 Species:Mus musculus


Alignment Length:324 Identity:112/324 - (34%)
Similarity:174/324 - (53%) Gaps:26/324 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 LGPQTLPLYKAVL---ITIIFGGIFITGVVGNLLVCIVIIRHSAMHTATNYYLFSLAVSDLLYLL 119
            |..:.|||:.|.|   :|.....:|:.|:.||||..:|:.|...:.|.||.||.|:|.||||..|
Mouse    92 LSDELLPLFPAPLLAGVTATCVALFVVGISGNLLTMLVVSRFRELRTTTNLYLSSMAFSDLLIFL 156

  Fly   120 FGLPTEVFLYWHQYPDLFGMPFCKIRAFISEACTYVSVFTIVAFSMERFLAICHPLHLYAMVGFK 184
            . :|.::...|...|..||...||:..|:||:|||.:|.||.|.|:||:.|||.||....:|...
Mouse   157 C-MPLDLVRLWQYRPWNFGDLLCKLFQFVSESCTYATVLTITALSVERYFAICFPLRAKVVVTKG 220

  Fly   185 RAIRIITALWIVSFISAIPFGLLSDIQYLN--YPLDHSRIEESAFCSMSPKIVNEIPVFEVSFCI 247
            |...:|..:|.|:|.||.|..:|..:::.|  .|.|.:....:.|...|..:...:.|..|    
Mouse   221 RVKLVILVIWAVAFCSAGPIFVLVGVEHENGTDPRDTNECRATEFAVRSGLLTVMVWVSSV---- 281

  Fly   248 FFVIPMILIILLYGRMGAKI-RSRTNQKLGVQQGTNNRETRNSQMRKKTVIRMLAAVVITFFVCW 311
            ||.:|:..:.:||..:|.|: |.|.:..:|        .:...|..|:|| :|||.||..|.:||
Mouse   282 FFFLPVFCLTVLYSLIGRKLWRRRGDAAVG--------SSLRDQNHKQTV-KMLAVVVFAFILCW 337

  Fly   312 FPFHLQRLIFLYAKNMD----NYLDINEALFSIAGFAYYVSCTVNPIVYSVMSRRYRVAFRELL 371
            .|||:.|  :|::|:.:    ....|::....::...:|:|..:|||:|::||::||||..:||
Mouse   338 LPFHVGR--YLFSKSFEPGSLEIAQISQYCNLVSFVLFYLSAAINPILYNIMSKKYRVAVFKLL 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CapaRNP_996140.1 7tm_4 85..374 CDD:304433 103/294 (35%)
7tm_1 85..356 CDD:278431 94/277 (34%)
GhsrXP_017175002.1 7tmA_GHSR 107..395 CDD:320259 103/303 (34%)
TM helix 1 108..132 CDD:320259 8/23 (35%)
TM helix 2 141..162 CDD:320259 11/21 (52%)
TM helix 3 179..201 CDD:320259 11/21 (52%)
TM helix 4 224..240 CDD:320259 6/15 (40%)
TM helix 5 272..295 CDD:320259 6/26 (23%)
TM helix 6 320..345 CDD:320259 15/27 (56%)
TM helix 7 363..388 CDD:320259 6/24 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D380940at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24243
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5416
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.050

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