DRSC/TRiP Functional Genomics Resources

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Protein Alignment CapaR and srw-17

DIOPT Version :9

Sequence 1:NP_996140.1 Gene:CapaR / 40393 FlyBaseID:FBgn0037100 Length:477 Species:Drosophila melanogaster
Sequence 2:NP_506783.1 Gene:srw-17 / 188395 WormBaseID:WBGene00005764 Length:386 Species:Caenorhabditis elegans


Alignment Length:403 Identity:79/403 - (19%)
Similarity:148/403 - (36%) Gaps:124/403 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 LYKAVLITIIFGGIFIT--GVVGNLLVCIVIIRHSAMHTATNYYLFSLAVSDLL-YLL--FG--- 121
            :|:|:.|.:....:|:.  .|..|:|..||:.:......|....:..:.::|:: |||  |.   
 Worm    26 IYRALGIILSDTNVFMQFFTVFINILHLIVLFQKELRTGAIYILMIGICLADIIGYLLDFFNVAY 90

  Fly   122 -------LPTEVFLYWHQYPDLFGMPFCKIRAFISEACTYVSVFTIVAFSMERFLAICHPLHLY- 178
                   :|....:|..:| ||..:.|....:...:....|:|:..:..::.|.|::..|:.:: 
 Worm    91 ERTWISTIPFYTNVYCLRY-DLVRVSFVDFVSIFVQMARPVAVWLAMMMALIRTLSVFFPMSIWI 154

  Fly   179 -AMVGFKRAI---RIITALWIVSFISAIPFGLLSDIQYLNYPL---------------DHSRIEE 224
             .:...|.||   .::...||:.:.|          ||....|               :|..:  
 Worm   155 QKLAKAKTAIFMSVVVFTFWILWYSS----------QYFTMTLRWYPDVLSKACTDYEEHRNL-- 207

  Fly   225 SAFCSMSPKIVNEIPVFEVSFCIFF----------VIPMIL------IILLYGRMGAKIRSRTNQ 273
            :.:..:.||         .||.:.|          .||.||      .:|:..|:..|.|...|:
 Worm   208 THYVLVVPK---------ASFSLVFKREKLEPFIRFIPAILYPILTITLLVQLRIIKKKRESMNK 263

  Fly   274 KLGVQQGTNNRETRNSQMRKKTVIRMLAAVVITFFVCWF----------PFHLQRLIFLYAKN-M 327
            .|     .|:|....:::             |.|...:|          .:.||::  |...| .
 Worm   264 NL-----LNDRSDNTTKL-------------ILFMTLFFMISEGLEGIGDYILQKI--LATPNYQ 308

  Fly   328 DNYLDINEALFSIAGFAYYVSCTVNPIVYS----VMSRRYRVAFRELLCGK-------------- 374
            |:.:|:..|| .:|.:.|....|:|.|.::    .||.:||...:.:||..              
 Worm   309 DSMVDVISAL-GVAQYFYTNLRTLNGISHAFICFAMSSQYRDTVKRMLCSSKKQRRGQNILVIST 372

  Fly   375 -AVGAYYNSGFAR 386
             :|.:.:||..:|
 Worm   373 VSVSSSHNSSRSR 385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CapaRNP_996140.1 7tm_4 85..374 CDD:304433 70/352 (20%)
7tm_1 85..356 CDD:278431 64/330 (19%)
srw-17NP_506783.1 7TM_GPCR_Srw 36..356 CDD:370978 70/362 (19%)
TM helix 2 66..91 CDD:341315 5/24 (21%)
TM helix 3 117..147 CDD:341315 4/29 (14%)
TM helix 4 161..181 CDD:341315 6/29 (21%)
TM helix 5 212..246 CDD:341315 9/42 (21%)
TM helix 6 268..310 CDD:341315 8/56 (14%)
TM helix 7 323..344 CDD:341315 4/20 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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