DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CapaR and srw-107

DIOPT Version :9

Sequence 1:NP_996140.1 Gene:CapaR / 40393 FlyBaseID:FBgn0037100 Length:477 Species:Drosophila melanogaster
Sequence 2:NP_503232.2 Gene:srw-107 / 187831 WormBaseID:WBGene00005854 Length:366 Species:Caenorhabditis elegans


Alignment Length:424 Identity:78/424 - (18%)
Similarity:149/424 - (35%) Gaps:111/424 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNSSTDPTFSELNASFTNTPDTLFATSVSSDPSHGFGEEDYACGTFNCSPKEFVAFVLGPQTLPL 65
            |||..:|.|.:   ||.|....|              |:|                         
 Worm     1 MNSEVEPDFVQ---SFQNVLSLL--------------EDD------------------------- 23

  Fly    66 YKAVLITIIFGGIFITGVVGNLLVCIVIIRHSAMHTATNYYLFSLAVSDLLYLLFGLPTEVFLYW 130
              |.|:..|...|   .::.|:...:||.|.|...::.|..:..:::.::..:|    |.::.|.
 Worm    24 --AFLVNFILACI---SLIANIFHFVVITRKSMRISSVNVLMIGVSICNIFRML----TAIYRYL 79

  Fly   131 H----QYPD----------LFGMPFCKIRAFISEACTYVSVFTIVA-------FSMERFLAICHP 174
            .    :||:          .|.:....::.:.....:::.:|...|       .|..|......|
 Worm    80 ELVDLEYPECITSDSYLKMYFDIISWWLQDYFRRCSSWMEIFIATARLIIMRDMSSARNTNAAKP 144

  Fly   175 ---LHLYAMVGFKRAIRIITALWI--VSFISAIPFGLLSDIQYLNYPLDHSRIEESAF-CSMSPK 233
               :.|..:|.|  |...:..:|:  |..:......|     |.|.......|:.|.| ..:.|:
 Worm   145 KLGVILMLLVFF--ASGAVQGIWLYTVKVVENQAHSL-----YSNCAEHQDVIKVSRFILDLRPE 202

  Fly   234 -------IVNEIPVFEVSFCIFFV----IPMILIILLYGRMGAKIRSRTNQKLGVQQGTNNRETR 287
                   ::....:.:| .|..|:    :|::.:.||......|....|.|:.||.  .:|.|  
 Worm   203 SNYGKLVLIRTYFILDV-ICSHFLPSLALPILTLFLLREMRIIKQSRSTLQRSGVV--VDNEE-- 262

  Fly   288 NSQMRKKTVIRMLAAVVITFFVCWFP---FHLQRLIFLYAKNMDNYLDINEALFSIAGFAYYVSC 349
                :.....:::|.:.||.|:...|   ..:.:........:..:|......|:|...|..:  
 Worm   263 ----KYGLPTKLIALLTITSFLADTPLGCIGIAKAFIQQGTKLMRFLTDLIVYFNILTTAMTI-- 321

  Fly   350 TVNPIVYSVMSRRYRVAFRELLCGKAVGAYYNSG 383
             .:|::..:||.:||:..|:||..|...|.:::|
 Worm   322 -FHPVMCLLMSSQYRITARKLLRIKKKSASFSAG 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CapaRNP_996140.1 7tm_4 85..374 CDD:304433 60/329 (18%)
7tm_1 85..356 CDD:278431 53/311 (17%)
srw-107NP_503232.2 7TM_GPCR_Srw 27..345 CDD:370978 62/343 (18%)
TM helix 2 56..81 CDD:341315 4/28 (14%)
TM helix 3 101..131 CDD:341315 2/29 (7%)
TM helix 4 145..165 CDD:341315 4/21 (19%)
TM helix 5 211..236 CDD:341315 4/25 (16%)
TM helix 6 262..292 CDD:341315 6/35 (17%)
TM helix 7 306..331 CDD:341315 4/27 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.