DRSC/TRiP Functional Genomics Resources

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Protein Alignment CapaR and srw-141

DIOPT Version :9

Sequence 1:NP_996140.1 Gene:CapaR / 40393 FlyBaseID:FBgn0037100 Length:477 Species:Drosophila melanogaster
Sequence 2:NP_503797.1 Gene:srw-141 / 186787 WormBaseID:WBGene00005888 Length:361 Species:Caenorhabditis elegans


Alignment Length:347 Identity:64/347 - (18%)
Similarity:133/347 - (38%) Gaps:96/347 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 IFITGVVGNLLVCIVIIRHSAMHTATNYYLFSLAVSDLLYLL------FGLPTEVFL-------- 128
            |||     ||...:::||.....::.|..:.|:|:.|:..:|      ||...|:..        
 Worm    48 IFI-----NLFHFLILIRKPLRSSSINIIMASVAIFDMCSMLFKIKQTFGPSIEIIFDPCFQSKW 107

  Fly   129 YWHQYPDLFGMPFCKIRAFISEACTYVSVFTIVAFSMERFLAICHPL------------HLYAMV 181
            ||:.:.|       :|...:.:.....|.:.:.:.::.|.|.|.:|:            ..:|::
 Worm   108 YWNVFLD-------RILIMLKDHSQRSSTWLLFSIALIRTLVIRNPMKTEYEKLTKPPTSFFAII 165

  Fly   182 GFKRAIRIITALWIVSFISAI---------------PFGLLSDIQYLNYPLDHSRIEESAFCSMS 231
            |       |:.|:....||..               |.|:||...|::...:.:......:.::.
 Worm   166 G-------ISLLFFPISISTFLEYDIFSEKYKSACNPKGVLSFYLYISKLFERNNGVILKYVTLG 223

  Fly   232 PKIV-NEIPVFEVSFCIFFVIPMILIILLYGRMGAKIRSRTNQKLGVQQGTNNRETRNSQMRKKT 295
            ..:| |.||.|     :|.|:..:|:..|:.....:.|..:::|:            |..::...
 Worm   224 NAMVSNIIPCF-----LFPVVTFLLVKELWKNENNRWRLLSSKKV------------NDSIKSTQ 271

  Fly   296 VIRMLAAVVITFFVCWFPFHLQRLIFLYAKNMDNYLDINEA---LFSIAGFAYYVSCTVNPI--- 354
            ::.:|..:   ||:..||..:       |..:..:.|.|..   :|....|.:.:...:|.|   
 Worm   272 LVLLLTCM---FFIAQFPIGI-------ASGVSYFFDKNPGITKIFHEIMFLFSIMLVLNTISHF 326

  Fly   355 -VYSVMSRRYRVAFRELL-CGK 374
             :...:|.:||...:::: ||:
 Worm   327 FICIFISSQYRAEVKKVIFCGR 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CapaRNP_996140.1 7tm_4 85..374 CDD:304433 60/338 (18%)
7tm_1 85..356 CDD:278431 56/319 (18%)
srw-141NP_503797.1 7TM_GPCR_Srw 38..347 CDD:370978 62/344 (18%)
TM helix 1 38..60 CDD:320109 5/16 (31%)
TM helix 2 69..91 CDD:320109 5/21 (24%)
TM helix 3 115..137 CDD:320109 2/21 (10%)
TM helix 4 162..178 CDD:320109 5/22 (23%)
TM helix 5 218..241 CDD:320109 7/27 (26%)
TM helix 6 267..292 CDD:320109 6/34 (18%)
TM helix 7 305..333 CDD:320109 4/27 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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