DRSC/TRiP Functional Genomics Resources

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Protein Alignment CapaR and srw-95

DIOPT Version :9

Sequence 1:NP_996140.1 Gene:CapaR / 40393 FlyBaseID:FBgn0037100 Length:477 Species:Drosophila melanogaster
Sequence 2:NP_001343674.1 Gene:srw-95 / 186699 WormBaseID:WBGene00005842 Length:381 Species:Caenorhabditis elegans


Alignment Length:412 Identity:71/412 - (17%)
Similarity:151/412 - (36%) Gaps:118/412 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 LFATSVSSDPSHGFGEEDYACGTFNCSPKEFVAFVLGPQTLPLYKAVLITIIFG--GIFITGVVG 85
            |:..|.|:.||:.           |.:..:...|::..:.. ::.:::|.|:..  |||.|.   
 Worm     7 LYNLSTSAFPSYD-----------NATRIDLYFFLIAVEKF-VHPSIIINIVISSIGIFTTS--- 56

  Fly    86 NLLVCIVIIRHSAMHTATNYYLFSLAVSDLLYLLFGL--------------PTE-------VFLY 129
              ....|:.|:|.:.::....:..:|:.|:|.:...:              |.|       .::|
 Worm    57 --FHLFVLSRNSMLKSSVILIMIGIAICDILVMFVSIIYNYLYLILEFNVKPCEPPAPLSFFYMY 119

  Fly   130 WHQYPDLFGMPFCKIRAFISEACTYVSVFTIVAFSMERFLAICHPLHLYAMVGFKRAIRIIT--- 191
            |             |...|::.....|.:..|..:..|.:.:        ....:||.|.:.   
 Worm   120 W-------------INVVINDLFRRTSTWLSVVMATIRLIVL--------KFSTRRAFRKVNFPK 163

  Fly   192 ---ALWIVSFISAIPFGLLSDIQYLNYPL----DHSRIEESAFCSMSPK---------------- 233
               .|.|.:.:|:||   |:.|.|..|.:    |...:....|.:..|:                
 Worm   164 FGFTLVIGTLLSSIP---LTVIYYFRYDIVKIGDWKPMNNCTFATSYPESRVIFTLVQSKVYQAN 225

  Fly   234 --IVNEI------PVFEVSFCIFFVIPMILIILLYGRMGAKIRSRTNQKLGVQQGTNNRETRNSQ 290
              :|.::      .:.::..|  |::|::..:|:.....||...|. ..|.::....| ||::..
 Worm   226 DGLVGKVYQLINGTISKLFPC--FLLPVLTYMLIVELKKAKDHQRM-LNLTIRPVIIN-ETQSVA 286

  Fly   291 MRKKTVIRMLAAVVITFFVCWFPFHLQRLIFLYAKNMDNYLDI-------NEALFSIAGFAYYVS 348
            ..::|. .::..:..:.|:...|..:.|::      ...|.|:       :.|.||.|.|..:.:
 Worm   287 STERTT-GLVVFITASTFLIEVPNGIVRVL------QFGYTDLGYWRMATSVAQFSSAFFVLHAA 344

  Fly   349 CTVNPIVYSVMSRRYRVAFREL 370
              :...::.:||.:||.|..::
 Worm   345 --LQGAIFFLMSSQYRRAVSKI 364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CapaRNP_996140.1 7tm_4 85..374 CDD:304433 58/348 (17%)
7tm_1 85..356 CDD:278431 53/332 (16%)
srw-95NP_001343674.1 7TM_GPCR_Srw 53..366 CDD:370978 60/354 (17%)
TM helix 2 72..100 CDD:341315 3/27 (11%)
TM helix 3 118..149 CDD:341315 7/51 (14%)
TM helix 4 163..183 CDD:341315 6/22 (27%)
TM helix 5 218..255 CDD:341315 4/38 (11%)
TM helix 6 286..316 CDD:341315 4/36 (11%)
TM helix 7 329..354 CDD:341315 5/26 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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