DRSC/TRiP Functional Genomics Resources

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Protein Alignment CapaR and srw-144

DIOPT Version :9

Sequence 1:NP_996140.1 Gene:CapaR / 40393 FlyBaseID:FBgn0037100 Length:477 Species:Drosophila melanogaster
Sequence 2:NP_503805.2 Gene:srw-144 / 186693 WormBaseID:WBGene00005891 Length:357 Species:Caenorhabditis elegans


Alignment Length:357 Identity:67/357 - (18%)
Similarity:121/357 - (33%) Gaps:115/357 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 ATNY--YLFSLAVSDLLY--LLFGLPTEVFLYWHQYPDLFGMPFCKIRAFISEACTYVSVFTIVA 162
            |.||  |..:.|:|...:  |||.:...||.|.|               ::|.|..::::|    
 Worm     8 ARNYPGYDNATAISLCQFESLLFEISNRVFYYEH---------------YLSVASIFINIF---- 53

  Fly   163 FSMERFLAICH-PLHLYAMVGFKRAIRIITALWIVSFISAIPFGLLS----DIQYLNYPL----- 217
                .||.:.| ||.       ..:|.||.|...:..|.::.:.:..    .|:|:..|.     
 Worm    54 ----HFLILIHKPLR-------SSSINIIMAFIAIFDICSMFYKMKQVYGRSIEYIFDPCLQSKW 107

  Fly   218 --------------DHSRIEESAFCSMSPKIVNEI-------PVFE------VSFCIFFVIPMIL 255
                          |||: ..|.:...|..::..:       |.:|      .||.....|.:|.
 Worm   108 YLDVYSEKVLLVVKDHSQ-RSSTWLLFSIALIRTLIIRNPLNPKYEKLANPPTSFFTMICINLIF 171

  Fly   256 I-ILLYGRMGAKIRSRTNQKLGVQQGTNNRETRNSQMRKKT------VIRMLAAVVITFFVCW-F 312
            . |.:...:|:.|.|:.:.......|........|.:.|:.      :..::.|:|.|...|: |
 Worm   172 FPISIATYLGSDITSQNHTSSCDPDGVRFYYLTVSALYKQNDGRILKISTLINAIVSTIIPCFIF 236

  Fly   313 PFHLQRLIFLY---------AKNMDNYLDINEA------------LFSIA--------GFAYYVS 348
            |.   ..:||.         .|.:.:...:|::            :|.||        |.:|:.|
 Worm   237 PI---VTVFLVKELWKAEANRKRLFSSKKVNDSSKNTQLVLFLTCVFFIAQFPIGISIGVSYFFS 298

  Fly   349 CTVNPIVYSVMSRRYRVAFRELLCGKAVGAYY 380
            .|..   :::|.......|..:|....:..::
 Worm   299 ETPG---FTIMLHEISYIFSVILIANTISHFF 327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CapaRNP_996140.1 7tm_4 85..374 CDD:304433 67/349 (19%)
7tm_1 85..356 CDD:278431 64/331 (19%)
srw-144NP_503805.2 7TM_GPCR_Srw 38..347 CDD:370978 56/327 (17%)
TM helix 1 38..60 CDD:320109 7/44 (16%)
TM helix 2 69..92 CDD:320109 4/22 (18%)
TM helix 3 115..137 CDD:320109 5/22 (23%)
TM helix 4 162..178 CDD:320109 3/15 (20%)
TM helix 5 218..241 CDD:320109 6/25 (24%)
TM helix 6 267..292 CDD:320109 3/24 (13%)
TM helix 7 307..333 CDD:320109 2/21 (10%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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