DRSC/TRiP Functional Genomics Resources

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Protein Alignment CapaR and srw-23

DIOPT Version :9

Sequence 1:NP_996140.1 Gene:CapaR / 40393 FlyBaseID:FBgn0037100 Length:477 Species:Drosophila melanogaster
Sequence 2:NP_507264.2 Gene:srw-23 / 186008 WormBaseID:WBGene00005770 Length:433 Species:Caenorhabditis elegans


Alignment Length:429 Identity:81/429 - (18%)
Similarity:163/429 - (37%) Gaps:116/429 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 SPKEFVAFVLG------PQTLPLYK-AVLITIIFGGIFITGVVGNLLVCIV----IIRHSAMHTA 102
            :|.::..||..      |...|..| .:...|:...:|| |::. :::|:|    ::|.|...:.
 Worm    45 NPNDYYGFVYNEYEYDFPTETPTLKHNIQYGILDSNVFI-GILA-IILCLVHLMILLRKSLRTSG 107

  Fly   103 TNYYLFSLAVSDLLYLLFGLPTEVFLYWHQYPDLFGMPFCKIRAFISEACT---YVSVFTIVAFS 164
            ...::.::.|||:|......|.:...|.|.:   |.:|   |.....:.|.   ::.| .:||.:
 Worm   108 VYVFMIAICVSDILNFSLAYPKDAIYYKHSW---FPVP---IHNNNGDECVKYGWIEV-DLVAQA 165

  Fly   165 ME--------------------RFLAICHPLH--LYAMVGFKRAIRIITALWIVSFISAIPFGLL 207
            ||                    |.||:..|::  :..:|...:|:.:...|.||         |:
 Worm   166 MELAHNVTRRLSIWLAMVMASLRTLAVAFPMNNQIQKLVKPGKAVSMAIILLIV---------LI 221

  Fly   208 S-DIQYLNYPLDHSRIEESAFCSMSPKI---VNEIPVFEVSFC----------IFFVIPMILIIL 258
            | |:..|...:....:.:...|.:.|::   |..:|..:.::.          ||.|..:||..|
 Worm   222 SYDMLLLKSRMSFYWLPDDTRCILKPRLQRYVLVMPANDDAYSISEDQKSVEKIFRVFQIILYPL 286

  Fly   259 LYGRMGAKIRSRTNQKLGVQQGTNNRETRNSQMRKKTVIRMLAAVVITF-----FVCWFPF---- 314
            |...:..::|....::..::|   |.::.|:.:       ::..:.|||     .:..|..    
 Worm   287 LTISLVIQLRIIKKKRKSMRQ---NEKSDNTTL-------LILVMTITFMFSEGLIVVFSLLDIK 341

  Fly   315 ----H--LQRLIFLYAKNMDNYLDINEALFSIAGF---AYYVSCTVNPIVYSVMSRRYRVAFREL 370
                |  |.||.......|.|...:....:::..|   ::.:.|.       :||.:||...:.|
 Worm   342 GKFRHDILDRLYIFEKDEMQNMRILVAVCYTLRLFNSMSHILVCV-------LMSSQYRDTVKSL 399

  Fly   371 LCGKAVGAYYNSGFARDH--------SSFRESSAYDRVH 401
            :..|.:     |.|.:|.        .:...:|..:::|
 Worm   400 VLWKTI-----SRFLKDRILKGKAISDTMYPASVAEKLH 433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CapaRNP_996140.1 7tm_4 85..374 CDD:304433 65/349 (19%)
7tm_1 85..356 CDD:278431 60/331 (18%)
srw-23NP_507264.2 7TM_GPCR_Srw 80..403 CDD:370978 68/357 (19%)
TM helix 2 108..133 CDD:341315 5/24 (21%)
TM helix 3 160..193 CDD:341315 7/32 (22%)
TM helix 4 205..225 CDD:341315 6/28 (21%)
TM helix 5 264..290 CDD:341315 7/25 (28%)
TM helix 6 309..339 CDD:341315 5/36 (14%)
TM helix 7 364..389 CDD:341315 2/31 (6%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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