DRSC/TRiP Functional Genomics Resources

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Protein Alignment CapaR and nmur-3

DIOPT Version :9

Sequence 1:NP_996140.1 Gene:CapaR / 40393 FlyBaseID:FBgn0037100 Length:477 Species:Drosophila melanogaster
Sequence 2:NP_001024524.1 Gene:nmur-3 / 184090 WormBaseID:WBGene00017176 Length:445 Species:Caenorhabditis elegans


Alignment Length:458 Identity:131/458 - (28%)
Similarity:200/458 - (43%) Gaps:108/458 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 NSSTDPTFSELNASFTNTPDTLFATSVSSDPSHGFGEEDYACGTFNCSPKEFV---AFVLGPQTL 63
            ||:|..|..|| ......||..|...::.......||:      ||.|..:.:   || |.|   
 Worm    23 NSNTPITTKEL-IKHCFHPDVQFLAHMTLKSLDHPGEQ------FNNSSNQLLLDRAF-LNP--- 76

  Fly    64 PLYKAVLITIIFGGIFITGVVGNLLVCIVIIRHSAMHTATNYYLFSLAVSDLLYLLFGLPTEVFL 128
                  ::|:||..:.:.|::||||..|||.:.:::|:.|||:|.:||.||...::.|:..::..
 Worm    77 ------ILTLIFVFVGLVGLIGNLLTVIVIFKTNSLHSHTNYFLANLATSDFCLIVVGVSFDLVN 135

  Fly   129 YWH-QYP-DLFGMPFCKIRAFISEACTYVSVFTIVAFSMERFLAICHPLHLYAMVGFKRAIRIIT 191
            .|: :.| |:||  :|.:.:......|:.|:.|||..:.|||.|||:|.....:...||..|.|.
 Worm   136 IWNDEEPLDIFG--YCSLTSTFISLFTFASILTIVLLTAERFTAICYPFSHRTIFDEKRVKRFIL 198

  Fly   192 ALWIVSFISAIPFGLLSDIQYLNYPLDHSRIEESAFCSM--------------SPKIVNEIPVFE 242
            .:|.|:.:.:|..|.:           ..|:.:. ||..              ||......| ||
 Worm   199 LIWFVALLPSIFIGSM-----------FKRVSQD-FCGFNRQMTYIGRCDLVTSPDSFFRYP-FE 250

  Fly   243 VSFCIFFVIPMILIILLYGRM-------------------------------------------- 263
            .:..|.||:|:..||..|.|:                                            
 Worm   251 SAITITFVLPLFFIIYCYFRILGTRHFLCITVNLSYTSNIFPVTLNEMSNSTHVHTPVGTARSDS 315

  Fly   264 GAKIRSRTNQKLGVQQ-----GTNNRETRNSQMRKKTVIRMLAAVVITFFVCWFPFHLQRLIFLY 323
            ||.....|:.....|.     .|.|.:...||..:|.||:||..|...||||:.|:|.||||..|
 Worm   316 GAFPFPHTSNNSNTQSFPLTVHTKNVQPPRSQQAQKMVIKMLVTVTAVFFVCYLPYHAQRLIVKY 380

  Fly   324 -AKNMDNYLDINEALFSIAGFAYYVSCTVNPIVYSVMSRRYRVAFRELLCGKAVGAYYNSGFARD 387
             :|:..| .|..:.|:.|||...|:|.::|||.|::||.|:|..|::|:  |.|.|:.    ||.
 Worm   381 NSKDCSN-SDFCKLLYPIAGILQYISASLNPIFYNLMSVRFRNGFKKLI--KDVWAHR----ARS 438

  Fly   388 HSS 390
            :|:
 Worm   439 YSN 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CapaRNP_996140.1 7tm_4 85..374 CDD:304433 103/354 (29%)
7tm_1 85..356 CDD:278431 96/336 (29%)
nmur-3NP_001024524.1 7tmA_NTSR-like 76..424 CDD:320110 106/372 (28%)
TM helix 1 78..102 CDD:320110 11/23 (48%)
TM helix 2 111..133 CDD:320110 8/21 (38%)
TM helix 3 150..172 CDD:320110 5/21 (24%)
TM helix 4 195..211 CDD:320110 5/15 (33%)
TM helix 5 246..269 CDD:320110 9/23 (39%)
TM helix 6 351..376 CDD:320110 13/24 (54%)
TM helix 7 392..417 CDD:320110 10/24 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D380940at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5416
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.950

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