DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CapaR and srw-118

DIOPT Version :9

Sequence 1:NP_996140.1 Gene:CapaR / 40393 FlyBaseID:FBgn0037100 Length:477 Species:Drosophila melanogaster
Sequence 2:NP_503811.1 Gene:srw-118 / 183443 WormBaseID:WBGene00005865 Length:378 Species:Caenorhabditis elegans


Alignment Length:401 Identity:75/401 - (18%)
Similarity:162/401 - (40%) Gaps:109/401 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 YACGTFNCSPKEFVAFVLGPQTLPLYKAVLITIIF------GGIFITGVVGNLLVCIVIIRHSAM 99
            |..|..|.:.|....|          :.:.:...|      ..|.::.::.|::...::.|.|..
 Worm    12 YYAGIRNSTAKSLCEF----------EEIFVPFSFHILSYSSEISVSSILINIVHFFILTRKSMR 66

  Fly   100 HTATNYYLFSLAVSDL------LYLLFGLPTEVFLYWHQYPDLFGMPFCK-----IRAFISEACT 153
            .::.|..:.::|:.|:      :.:||  ....|:::..:|:.:|....:     ::.:.....|
 Worm    67 TSSINILMAAVALFDIFTSLIEIQILF--ERYSFIFFSCFPETYGKVLNRHLLHLLKDYSRRCST 129

  Fly   154 YVSVFTIVAFSMERFLAICHPLH-LYAMVGFKRAIRIITALWIVSFI--SAIPFGLLS--DIQYL 213
            ::.||    .::.|.|.|.:|:. .|..:|..:|     :|::::.|  :::|..:..  ::|:.
 Worm   130 WLMVF----IALIRTLMIRNPMSTTYESLGNPKA-----SLFVIAGICTTSLPISMFKFFEVQFE 185

  Fly   214 NYP---------------LDHSRIEESAFCSMSPKIVNEIPVFEVSFCIFFVIPMILIILLYGRM 263
            ..|               :.|..::...|.:....:.|.| |.::..||  ::|.:.::|:.. :
 Worm   186 KSPSYHTCAPKGTYYIATMSHFFMKNHGFLAKYYNLFNSI-VSDIVPCI--LLPFVTLLLVMD-L 246

  Fly   264 GAKIRSRTNQKLGVQQGTNNRETRNSQMRKKTVIRMLAAVVITFFVCWFP----------FH--- 315
            ....:.|.| .:.|        ::::..|.||  .::..|.||||:..||          ||   
 Worm   247 WKTAKKRPN-IISV--------SKSNISRSKT--GLVFCVTITFFIVEFPYGLSIGFSWMFHNVL 300

  Fly   316 -LQRLIFLYAKNMDNYLDINEALFSIAGFAYYVSCTVNPIVYSVMSRRYRVAFRELL-CG----- 373
             |.|::..:.......:.:|             :|| :.||..::|.:||.:..::| ||     
 Worm   301 GLHRIVAYFGHIFSMLITLN-------------TCT-HMIVCLLLSSQYRGSMIDVLSCGYISQK 351

  Fly   374 --KAVGAYYNS 382
              .|.||..||
 Worm   352 PKVAKGAEVNS 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CapaRNP_996140.1 7tm_4 85..374 CDD:304433 63/341 (18%)
7tm_1 85..356 CDD:278431 56/315 (18%)
srw-118NP_503811.1 7TM_GPCR_Srw 53..346 CDD:370978 61/332 (18%)
TM helix 2 71..93 CDD:320109 3/21 (14%)
TM helix 3 115..137 CDD:320109 3/25 (12%)
TM helix 4 162..178 CDD:320109 2/15 (13%)
TM helix 5 217..240 CDD:320109 6/25 (24%)
TM helix 6 266..291 CDD:320109 10/26 (38%)
TM helix 7 307..332 CDD:320109 5/38 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.