DRSC/TRiP Functional Genomics Resources

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Protein Alignment CapaR and srw-15

DIOPT Version :9

Sequence 1:NP_996140.1 Gene:CapaR / 40393 FlyBaseID:FBgn0037100 Length:477 Species:Drosophila melanogaster
Sequence 2:NP_506766.1 Gene:srw-15 / 183380 WormBaseID:WBGene00005762 Length:376 Species:Caenorhabditis elegans


Alignment Length:363 Identity:76/363 - (20%)
Similarity:143/363 - (39%) Gaps:85/363 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 LYKAVL-----ITIIFGGIFITGVVGNLLVCIVIIRHSAMHTATNYYLFSLAVSDL--------- 115
            :||.:.     |.:..|   |..::.||...||:::......|...::..:.:||:         
 Worm    27 IYKTIYTICTKINLYLG---IATIIVNLFHLIVLLQKELRLCAVYIFMIGVCISDIVLTSINFYN 88

  Fly   116 -------LYLLFGLPTEVFLYWHQYPDL-FGMPFCKIRAFISEACTYVSVFTIVAFSMERFLAIC 172
                   |.|||....|:....:.|.:: .|:   ::.:.||:....:||:..|..::.|.|::.
 Worm    89 QAGELGWLPLLFAGSVEMSCLRYDYLEINIGL---QLLSTISQITRRLSVWLAVLMAIIRLLSVT 150

  Fly   173 HPL--HLYAMVGFKRAIRIITALWIVSFISAIPFGLLSDIQYLNY-----PLDHSRIEESAFCS- 229
            .||  .:..:...|.|  :||.:..:.|     :.|.|..|:..|     |.:.:.|.:|.|.| 
 Worm   151 FPLSQRVKKLTSAKGA--VITLMLCMMF-----WTLYSTWQFAFYRVFWLPDNANEICKSMFESF 208

  Fly   230 MSPKIVNEIPV-------------FEVSFCIFFVIPMILIILLYGRMGAKIRSRTNQKLGVQQGT 281
            ::|:.|...||             |.|:|....:.|::.|.||...:..|.|.:.||:       
 Worm   209 ITPRYVLATPVNLPKLMSTWGFIEFIVNFSSAIIYPLLTISLLVALLKIKKRRQNNQR------- 266

  Fly   282 NNRETRNSQMRKKTVIRMLAAVVITFFVCWFPFHLQRLIFLYAKNMDNYLDINEAL----FSIA- 341
              :|:..:....|.::.|....:::..:..|.   ..|::...|....||:...|:    |.|| 
 Worm   267 --KESEPADNTTKLILFMTITFMLSEGLSGFN---ALLMYNITKIQRKYLEFENAVLTSEFPIAV 326

  Fly   342 -----GFAYYVSCTVNPIVYSVMSRRYRVAFRELLCGK 374
                 .|:::..|       ..:|.:||...:.|...|
 Worm   327 LKTFNAFSHFFVC-------FFLSSQYRDVVKSLFISK 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CapaRNP_996140.1 7tm_4 85..374 CDD:304433 70/336 (21%)
7tm_1 85..356 CDD:278431 66/318 (21%)
srw-15NP_506766.1 7TM_GPCR_Srw 37..354 CDD:370978 72/348 (21%)
TM helix 2 67..97 CDD:341315 2/29 (7%)
TM helix 3 120..150 CDD:341315 7/32 (22%)
TM helix 4 164..189 CDD:341315 8/31 (26%)
TM helix 5 225..249 CDD:341315 4/23 (17%)
TM helix 6 273..299 CDD:341315 3/28 (11%)
TM helix 7 312..343 CDD:341315 6/37 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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