DRSC/TRiP Functional Genomics Resources

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Protein Alignment CapaR and nmur-2

DIOPT Version :9

Sequence 1:NP_996140.1 Gene:CapaR / 40393 FlyBaseID:FBgn0037100 Length:477 Species:Drosophila melanogaster
Sequence 2:NP_493666.2 Gene:nmur-2 / 173398 WormBaseID:WBGene00019616 Length:403 Species:Caenorhabditis elegans


Alignment Length:396 Identity:135/396 - (34%)
Similarity:198/396 - (50%) Gaps:46/396 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 EFVAFVLGPQTLPLYKAVLITIIFGGIFITGVVGNLLVCIVIIRHSAMHTATNYYLFSLAVSDLL 116
            |:|...||.:.......:...||:|.||:.|:.||:..||||..:.:||..||||||||||||::
 Worm    15 EYVLSTLGERCQSAGIVIPTVIIYGTIFLLGLFGNICTCIVIAANKSMHNPTNYYLFSLAVSDII 79

  Fly   117 YLLFGLPTEVFLYW-HQYPDLFGMPFCKIRAFISEACTYVSVFTIVAFSMERFLAICHPLHLYAM 180
            .|:.|||.|.:... :.||..|....||.|||:.|..:|.|:..|..||.||:|||||||.....
 Worm    80 ALILGLPMEFYQSLDYSYPYRFSEGICKARAFLIEFTSYASIMIICCFSFERWLAICHPLRSKIF 144

  Fly   181 VGFKRAIRIITALWIVSFISAIPFGLLSDIQYLNYPLDHSR-------------IEESAFCSMS- 231
            ....||..:|...|.:||:.|:|...:..|..|..|.|...             :..:.||:|: 
 Worm   145 STLWRANVLIILAWTISFVCALPIAFIVQINKLPLPEDAKYQPWTNKVSTDGIFVLHTEFCAMNQ 209

  Fly   232 --PKIVNEIPVFEVSFCIFFVIPMILIILLYGRMGAKIRSRTNQKLGVQQGTNNRETRNSQMRKK 294
              |.....|.:|  :|.:|||||.|.|:::|..:..::.|......|.:.....|...|     :
 Worm   210 SRPDQQKMIIIF--AFTVFFVIPAIAIVIMYAHIAVQLESSEIDLKGDKMVKKRRNKSN-----R 267

  Fly   295 TVIRMLAAVVITFFVCWFPFHLQRLIFLYAKNMD--------NYLDINEALFSIAGFAYYVSCTV 351
            ||::||.:||||||:||.|||:|||:.:|....:        .:|.:  .:|.|:||.||.:...
 Worm   268 TVLKMLLSVVITFFICWLPFHIQRLLSVYTTWSETTTISPPVQFLSM--IVFYISGFCYYSNSAA 330

  Fly   352 NPIVYSVMSRRYRVAFRELLCGKAVGAYYNSGFARDHSSFRESSAYD------------RVHSVH 404
            |||:|:::|::||.||...:.|..:..:...|..|...|.|.||:.:            ||...|
 Worm   331 NPILYNILSQKYRSAFCRTILGDHIANFVFKGHQRPGQSKRCSSSTEAEQRTLMTRGSVRVDKPH 395

  Fly   405 VRASQH 410
            .:...|
 Worm   396 RKLEVH 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CapaRNP_996140.1 7tm_4 85..374 CDD:304433 114/313 (36%)
7tm_1 85..356 CDD:278431 108/295 (37%)
nmur-2NP_493666.2 7tmA_capaR 32..346 CDD:320262 118/322 (37%)
TM helix 1 34..58 CDD:320262 12/23 (52%)
TM helix 2 67..89 CDD:320262 15/21 (71%)
TM helix 3 107..129 CDD:320262 9/21 (43%)
TM helix 4 152..168 CDD:320262 5/15 (33%)
TM helix 5 216..239 CDD:320262 10/24 (42%)
TM helix 6 267..292 CDD:320262 16/24 (67%)
TM helix 7 314..339 CDD:320262 10/26 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158537
Domainoid 1 1.000 183 1.000 Domainoid score I2045
eggNOG 1 0.900 - - E33208_3BGH7
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 217 1.000 Inparanoid score I2317
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG46196
OrthoDB 1 1.010 - - D380940at33208
OrthoFinder 1 1.000 - - FOG0001494
OrthoInspector 1 1.000 - - otm14503
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24243
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5416
SonicParanoid 1 1.000 - - X673
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.900

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