DRSC/TRiP Functional Genomics Resources

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Protein Alignment CapaR and ghsr

DIOPT Version :9

Sequence 1:NP_996140.1 Gene:CapaR / 40393 FlyBaseID:FBgn0037100 Length:477 Species:Drosophila melanogaster
Sequence 2:XP_002931618.1 Gene:ghsr / 100497774 XenbaseID:XB-GENE-484475 Length:359 Species:Xenopus tropicalis


Alignment Length:361 Identity:123/361 - (34%)
Similarity:194/361 - (53%) Gaps:34/361 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 DYACGTFNCSPKEFVAFVLGPQTLPLYKAVLITIIFGGIFITGVVGNLLVCIVIIRHSAMHTATN 104
            ||...:.|.|..|...|:.   .:|:...:.:|.|.  :||.|:.||::..:|:.::..|.|.||
 Frog    13 DYYYSSNNYSWPEDPVFLF---PVPVLTGITVTCIL--LFIIGISGNVMTMLVVSKYKDMRTTTN 72

  Fly   105 YYLFSLAVSDLLYLLFGLPTEVFLYWHQYPDLFGMPFCKIRAFISEACTYVSVFTIVAFSMERFL 169
            .||.|:|.||||..|. :|.:::..|...|..||...||:..|:||.|||.::..|.|.|:||:.
 Frog    73 LYLSSMAFSDLLIFLC-MPLDLYRLWQYRPWNFGSSLCKLFQFVSECCTYSTILNITALSVERYF 136

  Fly   170 AICHPLHLYAMVGFKRAIRIITALWIVSFISAIPFGLLSDIQYLN--YPLDHSRIEESAFCSMSP 232
            |||.||....::...|...:|:.||.|||:||.|..:|..:::.|  .|||.:..:.:.:...|.
 Frog   137 AICFPLKAKVVITKGRVKLVISVLWAVSFVSAGPIFVLVGVEHENGTNPLDTNECKATEYAIKSG 201

  Fly   233 KIVNEIPVFEVSFCIFFVIPMILIILLYGRMGAKIRSRTNQKLGVQQGTNNRETRNSQMRKKTVI 297
            .:.  |.|:..|  |||.:|:..:.:||..:|.|:..|..:.:|..  |:.|:..|.|     .:
 Frog   202 LLT--IMVWTSS--IFFFLPVFCLTVLYTLIGRKLWRRKRETIGPH--TSIRDKHNKQ-----TV 255

  Fly   298 RMLAAVVITFFVCWFPFHLQRLIFLYAKNMD-NYLDINEALFS-----IAGFAYYVSCTVNPIVY 356
            :|||.||..|.:||.|||:.|  :|::|:.: ..|:|  ||.|     ::...:|:|..:|||:|
 Frog   256 KMLAVVVFAFILCWLPFHVAR--YLFSKSFEAGSLEI--ALISQYCNLVSFVLFYLSAAINPILY 316

  Fly   357 SVMSRRYRVAFRELLCGKAVG--AYYNSGFARDHSS 390
            ::||::||||...|...|.|.  |.|.:   .|.||
 Frog   317 NIMSKKYRVAACRLFRLKQVSRKATYTT---NDESS 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CapaRNP_996140.1 7tm_4 85..374 CDD:304433 104/296 (35%)
7tm_1 85..356 CDD:278431 96/278 (35%)
ghsrXP_002931618.1 7tm_4 48..334 CDD:304433 106/301 (35%)
7tm_1 53..316 CDD:278431 96/278 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D380940at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24243
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5416
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.050

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