DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn10 and RPN10

DIOPT Version :9

Sequence 1:NP_001262168.1 Gene:Rpn10 / 40388 FlyBaseID:FBgn0015283 Length:396 Species:Drosophila melanogaster
Sequence 2:NP_012070.3 Gene:RPN10 / 856607 SGDID:S000001243 Length:268 Species:Saccharomyces cerevisiae


Alignment Length:257 Identity:111/257 - (43%)
Similarity:159/257 - (61%) Gaps:15/257 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVLESTMICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMT-LSNTVEVLATL 64
            ||||:|::..|||::.||||:..||...|.|.:..:...|..|||||.|||:: ......||:|.
Yeast     1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTF 65

  Fly    65 TSDAGRIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINHEEGDLVKQAK 129
            |::.|:|.:.:|..|.:|::::.|.::||.|.|||||.|....|||.||.|||:....:|::.||
Yeast    66 TAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAK 130

  Fly   130 RLKKEKVNVDIVSFGDHGNNNEILTAFINALNGKDGTGSHLVSV-PRGSVLSDALLSSPII--QG 191
            .|||..|.|||::||:...|.|:|..||.|:|......|||::| |...:|.:.:.|||||  :|
Yeast   131 TLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVTPGPRLLYENIASSPIILEEG 195

  Fly   192 EDGMGGAG-------LGGNVFEFGVDPNEDPELALALRVSMEEQRQRQE----SEQRRANPD 242
            ..|||..|       ..|...:|||||:.|||||:|||:||||::||||    .:|::..|:
Yeast   196 SSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSMEEEQQRQERLRQQQQQQDQPE 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn10NP_001262168.1 VWA_26S_proteasome_subunit 1..187 CDD:238729 78/187 (42%)
RPN10NP_012070.3 RPN10 1..236 CDD:227477 101/234 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157343690
Domainoid 1 1.000 88 1.000 Domainoid score I1823
eggNOG 1 0.900 - - E1_COG5148
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H55691
Inparanoid 1 1.050 194 1.000 Inparanoid score I891
Isobase 1 0.950 - 0.815465 Normalized mean entropy S715
OMA 1 1.010 - - QHG54175
OrthoFinder 1 1.000 - - FOG0004243
OrthoInspector 1 1.000 - - oto100221
orthoMCL 1 0.900 - - OOG6_102002
Panther 1 1.100 - - LDO PTHR10223
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1199
SonicParanoid 1 1.000 - - X2982
TreeFam 1 0.960 - -
1615.740

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