DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn10 and psmd4b

DIOPT Version :10

Sequence 1:NP_524204.1 Gene:Rpn10 / 40388 FlyBaseID:FBgn0015283 Length:396 Species:Drosophila melanogaster
Sequence 2:NP_001017624.1 Gene:psmd4b / 550287 ZFINID:ZDB-GENE-050417-96 Length:372 Species:Danio rerio


Alignment Length:407 Identity:231/407 - (56%)
Similarity:288/407 - (70%) Gaps:47/407 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVLESTMICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNTVEVLATLT 65
            |||||||:|.|||::.||||:.||||..|:|.:|::|.:|.||||||||||:|::|..|||.|||
Zfish     1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIICHSKTRSNPENNVGLITMANNCEVLTTLT 65

  Fly    66 SDAGRIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINHEEGDLVKQAKR 130
            .|.|||.||:|.|||:|.|:..||||:|||.|||||||||||||:.|||||:..:|.||||.|||
Zfish    66 PDTGRILSKLHAVQPRGVISFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDQEKDLVKMAKR 130

  Fly   131 LKKEKVNVDIVSFGDHGNNNEILTAFINALNGKDGTGSHLVSVPRGSVLSDALLSSPIIQGEDGM 195
            ||||||:|||::||:...|.|.||.|:|.||||:|.|||||:||.|..|:||||||||:.||   
Zfish   131 LKKEKVSVDIINFGEEEVNTEKLTVFVNTLNGKEGVGSHLVTVPPGPSLADALLSSPIMAGE--- 192

  Fly   196 GGA--GLGGNVFEFGVDPNEDPELALALRVSMEEQRQRQESEQRRANPDGAPPTGGDAGGGGGVS 258
            ||.  |||.:.|||||||:.||||||||||||||||||||.|.|||    |..:..|||      
Zfish   193 GGTIMGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRA----AVASAADAG------ 247

  Fly   259 GSGPGNEESAGAENEANTEEAMLQRALALSTETPEDNLPDFANMTEEEQIAFAMQMSMQ------ 317
            .|.|..:||         |.|:|:.:.|.:       ||||:.|||:||||:|:|||||      
Zfish   248 VSSPTADES---------ENALLKMSTAPA-------LPDFSRMTEDEQIAYALQMSMQGGEFGG 296

  Fly   318 -DAPD-DSVTQQAKRPKTDEANAPMDVDEDYSEVIGDPAFLQSVLENLPGVDPQSEAVRDAVGSL 380
             :|.| |:....|      |:.||.:.:||| :|:.||.||||||||||||||.:||:|:|:|||
Zfish   297 SEAMDVDTAAAAA------ESEAPKEDEEDY-DVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSL 354

  Fly   381 -NKDKDKKSDGKDSQKK 396
             ::::.|..:||...:|
Zfish   355 ASQNRTKPPEGKKEDEK 371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn10NP_524204.1 VWA_26S_proteasome_subunit 1..187 CDD:238729 123/185 (66%)
PSMD4_RAZUL 341..380 CDD:412092 25/38 (66%)
psmd4bNP_001017624.1 VWA_26S_proteasome_subunit 1..187 CDD:238729 123/185 (66%)
PSMD4_RAZUL 316..357 CDD:412092 27/41 (66%)

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