DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rpn10 and pip5k1bb

DIOPT Version :9

Sequence 1:NP_001262168.1 Gene:Rpn10 / 40388 FlyBaseID:FBgn0015283 Length:396 Species:Drosophila melanogaster
Sequence 2:XP_005166786.1 Gene:pip5k1bb / 447840 ZFINID:ZDB-GENE-040912-141 Length:528 Species:Danio rerio


Alignment Length:159 Identity:28/159 - (17%)
Similarity:51/159 - (32%) Gaps:45/159 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   219 LALRVSMEEQRQRQESEQRRANPDGAPPTGGDAGGGGGVSGSGPGNEESAGAENEANTEEAMLQR 283
            ::.||..:.|..|....::..|               .:|.....::|...::.|..|||...:.
Zfish   384 MSSRVFRKNQPNRFSPSKKARN---------------SISALKCSSQEVLSSQKEEKTEEKADRL 433

  Fly   284 ALALSTETPED------NLPDFANMTEE--EQIAFAMQMSMQDAPDDSVTQQAKRPKTDEA---- 336
            ..|.|..:.:.      |.||....|..  |..:|:..:|   .|...:.......|::|:    
Zfish   434 GGARSLASLDGQVLWSYNRPDLVLQTPHPYEASSFSHTLS---PPSVFIKDHYLEAKSNESRCAC 495

  Fly   337 ---------------NAPMDVDEDYSEVI 350
                           .:.||:|.|...|:
Zfish   496 STFTLEDSAICLTSEQSTMDIDRDDDSVL 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn10NP_001262168.1 VWA_26S_proteasome_subunit 1..187 CDD:238729
pip5k1bbXP_005166786.1 PIPKc 53..386 CDD:214623 0/1 (0%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.