DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn10 and rpn10

DIOPT Version :10

Sequence 1:NP_524204.1 Gene:Rpn10 / 40388 FlyBaseID:FBgn0015283 Length:396 Species:Drosophila melanogaster
Sequence 2:NP_594628.1 Gene:rpn10 / 2543682 PomBaseID:SPAC637.10C Length:243 Species:Schizosaccharomyces pombe


Alignment Length:244 Identity:112/244 - (45%)
Similarity:151/244 - (61%) Gaps:11/244 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVLESTMICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTL-SNTVEVLATL 64
            ||||:|||..|||::..||||.|||...|:|.::::...|:..||||..||||: .|:.:||:||
pombe     1 MVLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTL 65

  Fly    65 TSDAGRIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINHEEGDLVKQAK 129
            |.|.|:..|.||.:..:|......||:||.|.||||:.|..:.|||.||||||..:|.:|::.||
pombe    66 TRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAK 130

  Fly   130 RLKKEKVNVDIVSFGDHGNNNEILTAFINALNGKDGTGSHLVSVPRG-SVLSDALLSSPIIQGED 193
            |:||..|.:||:..|:. .|...|..||:|.|..|  ..||||:|.. .:|||.:..|||.|   
pombe   131 RMKKNNVAIDIIHIGEL-QNESALQHFIDAANSSD--SCHLVSIPPSPQLLSDLVNQSPIGQ--- 189

  Fly   194 GMGGAGLGGNVFEFGVDPNEDPELALALRVSMEEQRQRQESEQRRANPD 242
               |.....|.||:|||||.|.||||||.:||.|:|.|||...::::.:
pombe   190 ---GVVASQNQFEYGVDPNLDVELALALELSMAEERARQEVAAQKSSEE 235

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn10NP_524204.1 VWA_26S_proteasome_subunit 1..187 CDD:238729 85/187 (45%)
PSMD4_RAZUL 341..380 CDD:412092
rpn10NP_594628.1 VWA_26S_proteasome_subunit 1..186 CDD:238729 85/187 (45%)
Blue background indicates that the domain is not in the aligned region.

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