DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdk12 and AT1G09600

DIOPT Version :9

Sequence 1:NP_001262167.1 Gene:Cdk12 / 40385 FlyBaseID:FBgn0037093 Length:1157 Species:Drosophila melanogaster
Sequence 2:NP_172431.1 Gene:AT1G09600 / 837487 AraportID:AT1G09600 Length:714 Species:Arabidopsis thaliana


Alignment Length:558 Identity:175/558 - (31%)
Similarity:259/558 - (46%) Gaps:105/558 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   592 DNSSSVDGNTPNAADGRSAPGSGTPAAASTTSNGLQALGSKPDLDLNNIPMPNKQNDSVVSNPAS 656
            |||:|:..|. |..:.||.|                          ...|...|::.|..|:..:
plant    17 DNSNSIVSNV-NVKERRSKP--------------------------KKTPKKKKKSKSASSSKDN 54

  Fly   657 NADVPDSVAQLKQPLLVPPFSASKNNIKPKSLTSLPLPPGMNVLDLAGARSPSPGQKKESDEKNV 721
            |..                |....|:.|..|||.|               .|...:|.:..||.|
plant    55 NVG----------------FEERSNDNKEASLTLL---------------IPIDAKKDDESEKKV 88

  Fly   722 TSSGSANKSVLNLPMPPVIPGSEELSGDDDVIDSPEDFDAPAVGTVHGHGGGPGTTRQRPVILNR 786
            .....:::.|....     |...|:..::             :||:.    .|..||...|....
plant    89 NLERKSSRLVFQRR-----PTGIEVGANN-------------IGTLQ----QPKMTRICSVSNGE 131

  Fly   787 RDSR--------------NNVRDWGERCVDVFEMIAQIGEGTYGQVYKARDHHTNDMVALKKVRL 837
            |.::              ..:..|..|..|.||.:.:||:|||..||||||..||.:|||||||.
plant   132 RGAQVMAGWPSWLASVAGEAINGWIPRKADSFEKLEKIGQGTYSSVYKARDLETNQLVALKKVRF 196

  Fly   838 EHEKEGFPITAVREIKILRQLNHRNIVNLHEIVTDKQDAVEFRKDKGSFYLVFEYMDHDLMGLLE 902
            .:..........|||.|||:|:|.|::.|..::|.:.        .||.||:||||:|||.||..
plant   197 ANMDPDSVRFMAREIIILRRLDHPNVMKLEGLITSRV--------SGSMYLIFEYMEHDLAGLAS 253

  Fly   903 SGMVDFNEENNASIMKQLLDGLNYCHKKNFLHRDIKCSNILMNNRGKVKLADFGLARLYNADDRE 967
            :..::|:|......|||||.||.:||.:..||||||.||:|:::...:|:.|||||..|....::
plant   254 TPGINFSEAQIKCYMKQLLHGLEHCHSRGVLHRDIKGSNLLLDHNNNLKIGDFGLANFYQGHQKQ 318

  Fly   968 RPYTNKVITLWYRPPELLLGEERYGPSIDVWSCGCILGELFVKRPLFQANAEMAQLETISKICGS 1032
             |.|::|:||||||||||||...||.::|:||.||||.|||..:|:.....|:.||..|.|:|||
plant   319 -PLTSRVVTLWYRPPELLLGSTDYGVTVDLWSTGCILAELFTGKPIMPGRTEVEQLHKIFKLCGS 382

  Fly  1033 PVPAVWPNVIKLPLFHTLKQKKTHRRRLREDFEFMPAPALDLLDKMLDLDPDKRITAEDALRSPW 1097
            |....| .:.|||.....|.::.::|.:.|.|:.:|:.||.|::.:|.::||.|.|...||.|.:
plant   383 PSEEYW-KISKLPHATIFKPQQPYKRCVAETFKSLPSSALALVEVLLAVEPDARGTTASALESEF 446

  Fly  1098 LRKINPDEMPTPQLPTWQDCHELWSKKRRRQMREQQES 1135
            . ..:|.......||.:|...|:..|.:..:.:.::::
plant   447 F-TTSPLASDPSSLPKYQPRKEIDVKAQEEEAKRKKDT 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdk12NP_001262167.1 STKc_CDK12 796..1098 CDD:270847 133/301 (44%)
S_TKc 804..1098 CDD:214567 130/293 (44%)
AT1G09600NP_172431.1 STKc_CDK9_like 163..447 CDD:270832 130/293 (44%)
S_TKc 163..447 CDD:214567 130/293 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0600
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D925637at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm2442
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24056
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.920

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