DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cdk12 and Cdk18

DIOPT Version :10

Sequence 1:NP_649325.2 Gene:Cdk12 / 40385 FlyBaseID:FBgn0037093 Length:1157 Species:Drosophila melanogaster
Sequence 2:XP_063128137.1 Gene:Cdk18 / 289019 RGDID:1309523 Length:474 Species:Rattus norvegicus


Alignment Length:470 Identity:153/470 - (32%)
Similarity:223/470 - (47%) Gaps:99/470 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   670 PLLVPPFSASKNNIKPKSLTSLPLPPGM-----------NVL---------DLAGARSPSPGQKK 714
            |||:   .....|.|.:...|:|.|..:           |.|         |..|..||....::
  Rat    20 PLLI---MNKMKNFKRRLSLSVPRPETIEESLTEFTEQFNQLHTQRNEDGRDEPGQLSPGVQYQQ 81

  Fly   715 ESDEKNVTSSGSANKSVLNLPMPPVIPGSEELSGDDDVIDSPEDF------DAPAVGTVHGHGGG 773
            ..:::.. |....||. |:|||.               |..|::|      :.|.:         
  Rat    82 RQNQRRF-SMEDLNKR-LSLPMD---------------IRLPQEFLQKLQLENPGL--------- 120

  Fly   774 PGTTRQRPVILNRRDSRNNVRDWGERCVDVFEMIAQIGEGTYGQVYKARDHHTNDMVALKKVRLE 838
                   |..|.|...|.::.|.|...::.:..:.::|||||..|:|.|...|.::||||::|||
  Rat   121 -------PKPLTRMSRRASLSDIGFGKLETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLE 178

  Fly   839 HEKEGFPITAVREIKILRQLNHRNIVNLHEIV-TDKQDAVEFRKDKGSFYLVFEYMDHDLMGLLE 902
            || ||.|.||:||:.:|:.|.|.|||.||::: ||:           |..|||||:|.||...|:
  Rat   179 HE-EGAPCTAIREVSLLKDLKHANIVTLHDLIHTDR-----------SLTLVFEYLDSDLKQYLD 231

  Fly   903 SGMVDFNEENNASIMKQLLDGLNYCHKKNFLHRDIKCSNILMNNRGKVKLADFGLARLYNADDRE 967
            ......|..|....|.|||.||.|||::..||||:|..|:|:|.||::|||||||||..:..  .
  Rat   232 HCGNLMNMHNVKIFMFQLLRGLAYCHRRKILHRDLKPQNLLINERGELKLADFGLARAKSVP--T 294

  Fly   968 RPYTNKVITLWYRPPELLLGEERYGPSIDVWSCGCILGELFVKRPLFQANAEMAQLETISKICGS 1032
            :.|:|:|:|||||||::|||...|...||:|..||||.|:...:|||..:....:|..|.::.|:
  Rat   295 KTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGKPLFPGSTVKEELHLIFRLLGT 359

  Fly  1033 PVPAVWPNVIKLPLFHTLKQKKTHRRRLREDFEFMP------APALD-----LLDKMLDLDPDKR 1086
            |....||.|..:..|......:           ::|      ||.||     ||..:|..:...|
  Rat   360 PTEESWPGVTSISEFRAYNFPR-----------YLPQPLLSHAPRLDTEGINLLTSLLLYESKSR 413

  Fly  1087 ITAEDALRSPWLRKI 1101
            ::||.||..|:.:.:
  Rat   414 MSAEAALSHPYFQSL 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdk12NP_649325.2 STKc_CDK12 796..1098 CDD:270847 123/313 (39%)
Cdk18XP_063128137.1 None

Return to query results.
Submit another query.