DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdk12 and lsk1

DIOPT Version :9

Sequence 1:NP_001262167.1 Gene:Cdk12 / 40385 FlyBaseID:FBgn0037093 Length:1157 Species:Drosophila melanogaster
Sequence 2:NP_594393.1 Gene:lsk1 / 2541672 PomBaseID:SPAC2F3.15 Length:593 Species:Schizosaccharomyces pombe


Alignment Length:757 Identity:227/757 - (29%)
Similarity:320/757 - (42%) Gaps:189/757 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   397 YSRDRYSRRSSRSPSVQHSRSRQSPS----------GGLSSGSNAFRHGGSHKHKYGTTVSSTPS 451
            ||:....||....|:....|:.:..|          ||.:..||||::..|         |.:||
pombe     3 YSKSTIYRRQGTEPNSHFRRTVEEKSQLSGTNEESLGGHTLSSNAFKNNSS---------SISPS 58

  Fly   452 HTTRTSK-RASGTGTSGDRYSRSPRTSSRYMESSPPSPVGASGSHHYHHRRSPRMRQRTRGDSRR 515
            .:.:..: :...|....|.:|...|...|...|                |:|.|.:.:.....|.
pombe    59 SSAKDPREQRKRTFPLNDTHSSRARQHERPFRS----------------RKSRRRKGKKAFSPRP 107

  Fly   516 RSPSSASSESSAS--RSRSPTSRDLKHKREEYIKKISETSLFAELVKDRHKRQKALKEIIERQEE 578
            .||.|.|...|.|  |:|:.|::|...||.|.....|.:.:.....::..|||            
pombe   108 GSPPSPSFYRSGSQKRARNLTTKDYFAKRSESSSSASVSPISPSANRNDSKRQ------------ 160

  Fly   579 NSNSNSNGALTINDNSSSVDGNTPNAADGRSA---PGSGTPAAASTTSNGLQALGSKPDLDLNNI 640
                    |.:...:..|.....|:|.:||..   |.|..|                        
pombe   161 --------ASSFRRSPPSSVHMKPSAFNGRKVSRRPSSSPP------------------------ 193

  Fly   641 PMPNKQNDSVVSNPASNADVPDSVAQLKQPLLVPPFSASKN-----NIKPKSLTSLPLPPGMNVL 700
            |:|:..:::..|:....:.|...            |..:|:     :|..:..:....||     
pombe   194 PIPSIPHETTSSDTQKKSSVSSG------------FPENKHGKFHFHIPNERRSRFDQPP----- 241

  Fly   701 DLAGARSPSPGQKKESDEKNVTSSGSANKSV-LNLPMPPVIPGSEELSGDDDVIDSPEDFDAPAV 764
                             .|.:..:.:|.:|| ..||.||                          
pombe   242 -----------------SKRMALTSTARESVPAPLPSPP-------------------------- 263

  Fly   765 GTVHGHGGGPGTTRQRPVILNRRDSRNNVRDWGERCVDVFEMIAQIGEGTYGQVYKARDHHTNDM 829
                   .||..|...|                   ...:|.|.||||||||:||||.:..|.|:
pombe   264 -------SGPIYTYTYP-------------------KPAYEKIDQIGEGTYGKVYKAINTVTGDL 302

  Fly   830 VALKKVRLEHEKEGFPITAVREIKILRQLNHRNIVNLHEIVTDKQDAVEFRKDKGSFYLVFEYMD 894
            ||||::|||.||:|||||.|||:|||::|.|:|||.|.||:.          :|.|.|:||||||
pombe   303 VALKRIRLEQEKDGFPITTVREVKILQRLRHKNIVRLLEIMV----------EKSSVYMVFEYMD 357

  Fly   895 HDLMGLLESGMVDFNEENNASIMKQLLDGLNYCHKKNFLHRDIKCSNILMNNRGKVKLADFGLAR 959
            |||.|:|.:..:.|...|...:.||:.:.|.|.|.:..||||||.||||:||.|.:|.|||||||
pombe   358 HDLTGVLLNSQLHFTPGNIKHLSKQIFEALAYLHHRGVLHRDIKGSNILLNNNGDLKFADFGLAR 422

  Fly   960 LYNADDRERPYTNKVITLWYRPPELLLGEERYGPSIDVWSCGCILGELFVKRPLFQANAEMAQLE 1024
             :|...:...|||:|||||:|||||||||..|..::|:||.|||:.|||..:|.||...|::|||
pombe   423 -FNTSSKSANYTNRVITLWFRPPELLLGETAYDTAVDIWSAGCIVMELFTGKPFFQGRDEISQLE 486

  Fly  1025 TISKICGSPVPAVWPNVIKLPLFHTLKQKKTHRRRLREDF-EFMPAPALDLLDKMLDLDPDKRIT 1088
            .|..:.|:|....||.|..||.:..||..:..:.|..|.| |.:...|:||..|:|.|:|..|.:
pombe   487 VIYDMMGTPDVHSWPEVKNLPWYELLKPVEEKKSRFVETFKEILSPAAIDLCQKLLALNPFCRPS 551

  Fly  1089 AEDALRSPWLRKINPDEMPTPQLPTWQDCHELWSKKRRRQMR 1130
            |.:.|...:....:|...|...|...|.....|..|:|:..|
pombe   552 AHETLMHEYFTSESPPPEPAVILKNMQGSWHEWESKKRKSKR 593

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdk12NP_001262167.1 STKc_CDK12 796..1098 CDD:270847 145/302 (48%)
S_TKc 804..1098 CDD:214567 145/294 (49%)
lsk1NP_594393.1 STKc_CDK9_like 277..561 CDD:270832 145/294 (49%)
S_TKc 277..561 CDD:214567 145/294 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 277 1.000 Domainoid score I312
eggNOG 1 0.900 - - E1_KOG0600
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 322 1.000 Inparanoid score I544
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - oto100926
orthoMCL 1 0.900 - - OOG6_101677
Panther 1 1.100 - - LDO PTHR24056
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R186
SonicParanoid 1 1.000 - - X546
TreeFam 00.000 Not matched by this tool.
109.890

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