DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdk12 and cdk-12

DIOPT Version :9

Sequence 1:NP_001262167.1 Gene:Cdk12 / 40385 FlyBaseID:FBgn0037093 Length:1157 Species:Drosophila melanogaster
Sequence 2:NP_001367220.1 Gene:cdk-12 / 175559 WormBaseID:WBGene00007135 Length:734 Species:Caenorhabditis elegans


Alignment Length:783 Identity:304/783 - (38%)
Similarity:413/783 - (52%) Gaps:165/783 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   363 PSTPPHKRRKFSDGREVGLGNFEHSRHHSGKYER-YSRDRYSRRSSRSPSVQHSRSRQSPSGGLS 426
            |.:..|:|     .|:...|:.|.:|.|||...| ||:|:  |.|||    |..|.|...|..  
 Worm     5 PGSSTHER-----DRKGSYGHRERTRSHSGSPSRFYSKDK--RGSSR----QGVRPRDRDSKD-- 56

  Fly   427 SGSNAFRHGGSHKHKYGTTVSSTPSHTTRTSKRASGTGTSGDRYSRSPRTSSRYMESSPPSPVGA 491
                                |.:|.:..|...|..| |...||    .|....|.:.        
 Worm    57 --------------------SISPQYKQRNWSRGGG-GGGRDR----GRNDFSYRKK-------- 88

  Fly   492 SGSHHYHHRRSPRMRQRTRGDSRRRSPS-SASSESSASRSRSPTSRDLKHKREEYIKKISETSLF 555
              ...|:.||..|.|.|    ||.|||. |.||:.|..|:.|.:|.          ..:.:|||.
 Worm    89 --GKDYNKRRDKRSRSR----SRHRSPKRSGSSKKSKRRNSSGSSS----------SDLMDTSLM 137

  Fly   556 AELVK--DRHKRQKALKEIIERQEENSNSNSNGALTINDNSSSVDGNTPNAADGRSAPGSGTPAA 618
            :||.|  |.....|:.|:..:|::.:|:|:|         ||....:.|.:::|.:.  :..|..
 Worm   138 SELKKHGDYGSSSKSKKKSRKRRKHSSSSSS---------SSGEAMDLPVSSNGMNV--TAIPPP 191

  Fly   619 ASTTSNGLQALGSKPDLDLNNIPMPNKQNDSVVSNPASNADVPDSVAQLKQPLLVPP-----FSA 678
            .|...|..|.:.|:|.      |.|...|...::.|......|.|:.        ||     |:|
 Worm   192 PSFNINPFQPMFSQPP------PPPLPPNSQFMTPPPRPPPAPFSIP--------PPSVDIHFAA 242

  Fly   679 SKNNIKPKSLTSLPLPPGMNVLDLAGARSPSPGQKKESDEKNVTSSGSANKSVLNLPMPPVIPGS 743
            :.:    .||:|:|.||                  .::|     ...|::|....|||||     
 Worm   243 TAS----FSLSSIPPPP------------------PQTD-----GGASSSKRQDPLPMPP----- 275

  Fly   744 EELSGDDDVIDSPEDFDAPAVGTVHGHGGGPGTTRQRPVILNRRDSRNN----VRDWGERCVDVF 804
                            |:..:.|             ||||..||....|    ...|.:..:..:
 Worm   276 ----------------DSKRIAT-------------RPVITTRRGHATNRPSDSDSWYKTNLTHY 311

  Fly   805 EMIAQIGEGTYGQVYKARDHHTNDMVALKKVRLEHEKEGFPITAVREIKILRQLNHRNIVNLHEI 869
            .|:.|||||||||||||.::.|.:.||||:||||:|||||||||:|||||||||:|:|||.|.:|
 Worm   312 TMLDQIGEGTYGQVYKAVNNLTGEQVALKRVRLENEKEGFPITAIREIKILRQLHHKNIVRLMDI 376

  Fly   870 VTDKQDAVEFRKDKGSFYLVFEYMDHDLMGLLES-GMVDFNEENNASIMKQLLDGLNYCHKKNFL 933
            |.|.....|.::.:.:|||||||:||||:||||| .:||||::...|:.||||:||.|.|...||
 Worm   377 VIDDISMDELKRTRANFYLVFEYVDHDLIGLLESKELVDFNKDQICSLFKQLLEGLAYIHNTGFL 441

  Fly   934 HRDIKCSNILMNNRGKVKLADFGLARLYNADDRERPYTNKVITLWYRPPELLLGEERYGPSIDVW 998
            ||||||||||:||:|::|:||.|||||:  :...|.|||:||||||||||||||:|||||:||||
 Worm   442 HRDIKCSNILVNNKGELKIADLGLARLW--EKESRLYTNRVITLWYRPPELLLGDERYGPAIDVW 504

  Fly   999 SCGCILGELFVKRPLFQANAEMAQLETISKICGSPVPAVWPNVIKLPLFHTLKQKKTHRRRLRED 1063
            |.||:|||||.::|||..|.|..|||.|||:||||....||.:.:|..::|.:.|:|::||:||:
 Worm   505 STGCMLGELFTRKPLFNGNNEFGQLELISKVCGSPNVDNWPELTELVGWNTFRMKRTYQRRIREE 569

  Fly  1064 FE-FMPAPALDLLDKMLDLDPDKRITAEDALRSPWLRKINPDEMPTPQLPTWQDCHELWSKKRRR 1127
            || .||..|:|||||||.|:|:|||:|::||..||:|.:....:...:||..|||||:||||:::
 Worm   570 FEHIMPREAVDLLDKMLTLNPEKRISAKEALNHPWIRSLEHTTVQPLKLPQHQDCHEMWSKKQKK 634

  Fly  1128 QMR 1130
            ..|
 Worm   635 SAR 637

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdk12NP_001262167.1 STKc_CDK12 796..1098 CDD:270847 184/303 (61%)
S_TKc 804..1098 CDD:214567 183/295 (62%)
cdk-12NP_001367220.1 STKc_CDK12 303..605 CDD:270847 184/303 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 375 1.000 Domainoid score I459
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 437 1.000 Inparanoid score I943
Isobase 1 0.950 - 0 Normalized mean entropy S1668
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D344403at33208
OrthoFinder 1 1.000 - - FOG0000444
OrthoInspector 1 1.000 - - oto20339
orthoMCL 1 0.900 - - OOG6_101677
Panther 1 1.100 - - LDO PTHR24056
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R186
SonicParanoid 1 1.000 - - X546
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1211.950

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