DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdk12 and cdk-9

DIOPT Version :9

Sequence 1:NP_001262167.1 Gene:Cdk12 / 40385 FlyBaseID:FBgn0037093 Length:1157 Species:Drosophila melanogaster
Sequence 2:NP_492906.2 Gene:cdk-9 / 173023 WormBaseID:WBGene00000410 Length:478 Species:Caenorhabditis elegans


Alignment Length:473 Identity:165/473 - (34%)
Similarity:240/473 - (50%) Gaps:78/473 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   737 PPVIPGSEELSGDDDVIDSPEDFDAPAVGTVHGHGGG--PGTTRQRPVILNRRDSRNNVRDWGE- 798
            ||..|.:|...      :.|:........|....|||  |..|.....:..:..:...:.|... 
 Worm    18 PPKRPNTEHAQ------EPPKRALIGGQTTPSSSGGGQTPNGTNYELEVKQQLSNYQKLFDQATY 76

  Fly   799 ---RCVDVFEMIAQIGEGTYGQVYKARDHHTNDMVALKKVRLEHEKEGFPITAVREIKILRQLNH 860
               |.|..:|.:.:||:||:|:|:|||..:|..||||||:.:|:|||||||||:||:|:|.||.|
 Worm    77 PFIRDVSTYEKLNKIGQGTFGEVFKARCKNTGRMVALKKILMENEKEGFPITALREVKMLEQLKH 141

  Fly   861 RNIVNLHEIVTDKQDAVEFRKDKGSFYLVFEYMDHDLMGLLESGMVDFNEENNASIMKQLLDGLN 925
            .||.:|.|:.:.|.......||:.:||||.....|||.|||.:..:..:..:..::||.|:.|||
 Worm   142 PNITDLIEVCSAKSTGTTGSKDRATFYLVMALCAHDLAGLLSNPKIRMSLVHIKTMMKHLMSGLN 206

  Fly   926 YCHKKNFLHRDIKCSNILMNNRGKVKLADFGLARLYNADDRE-----RP-YTNKVITLWYRPPEL 984
            ..|:...||||:|.:|:|::..|.:|||||||||.:  ..||     || |||:|:|||||||||
 Worm   207 KLHRSKILHRDMKAANVLISKDGILKLADFGLARPF--VQRENGAGPRPLYTNRVVTLWYRPPEL 269

  Fly   985 LLGEERYGPSIDVWSCGCILGELFVKRPLFQANAEMAQLETISKICGSPVPAVWPNVIKLPLFHT 1049
            |||:.:||..||||..|||:.|::.::|:.|.:.|..||:.||.:|||....||||.:.:||:..
 Worm   270 LLGDRQYGTKIDVWGAGCIMAEMWTRQPIMQGDTEQKQLQLISGLCGSINKDVWPNCVNMPLWSA 334

  Fly  1050 L-------------------------------------KQKKTHRRRLREDFEFMPAPALDLLDK 1077
            :                                     |..|.|.....:|       ||.||:.
 Worm   335 MSSEPNSALPQGKYRILPNKMKNLMKFDAPDSKTDPFGKNVKQHDSATDDD-------ALHLLEI 392

  Fly  1078 MLDLDPDKRITAEDALRSPWLRKINP----------DEMPTPQL--PTWQDCHELWSKKRRRQMR 1130
            :|.:|||||.|:::|....|..| :|          |.:|..|.  ...:..|....:.:..|.|
 Worm   393 LLAIDPDKRPTSDEAEDDIWFFK-DPVPMANVQDLMDTIPNSQFEYTVGKGAHANRGRHQNAQQR 456

  Fly  1131 -EQQESLPPTVIASTKYQ 1147
             .||::.|...|.:.:|:
 Worm   457 PNQQQARPSNAIPAGQYR 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdk12NP_001262167.1 STKc_CDK12 796..1098 CDD:270847 139/348 (40%)
S_TKc 804..1098 CDD:214567 137/336 (41%)
cdk-9NP_492906.2 STKc_CDK9 72..413 CDD:270848 140/349 (40%)
S_TKc 85..413 CDD:214567 137/336 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D344403at33208
OrthoFinder 1 1.000 - - FOG0000444
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R186
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.950

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