DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cdk12 and cdk12

DIOPT Version :9

Sequence 1:NP_001262167.1 Gene:Cdk12 / 40385 FlyBaseID:FBgn0037093 Length:1157 Species:Drosophila melanogaster
Sequence 2:XP_012826946.1 Gene:cdk12 / 100038049 XenbaseID:XB-GENE-493308 Length:1466 Species:Xenopus tropicalis


Alignment Length:1206 Identity:436/1206 - (36%)
Similarity:581/1206 - (48%) Gaps:288/1206 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LVEYSDVSSED--FSD----QEAGDLDADAGKGAGNIKKPKPAPDNQF-SKGRLDAKPDKEGYDN 68
            ||||.|:||:.  |||    ||..:.|.         ::|....|... |:.|...|..||.   
 Frog    63 LVEYDDISSDSDTFSDVPAKQERRENDE---------RRPSEKSDKMHKSRHRHQHKRLKEA--- 115

  Fly    69 YRSRRAEDSSDP---------VAAGSRQTSSSEATNPREEPSQASNTSKDELWGREIYMSSDSID 124
            .|:::.|....|         ....|:....|.|....:|..:...|||..        |.||  
 Frog   116 TRTKQVEKERKPEKTQEVMVNKVPSSKDKIISSAKRTADEQEEHGRTSKSS--------SKDS-- 170

  Fly   125 TDELEAEMKRQKRKKQKKEKHKHKSKKKSKKRKKKRAKSYSSIDSMSDNDINALLDRRYTPPTAP 189
                .::|.:.|.:::::.|..||.:.|| .||:..:|.|.:.||                |...
 Frog   171 ----RSKMHKDKSRREREMKSGHKERSKS-HRKRDSSKRYKTSDS----------------PKRK 214

  Fly   190 SKSNERTVSAAPSSFTPHNLKESS-------SPATPPPVRRPNTNSNYYGESSLETANSALGSNL 247
            .:|..|....:|.....|:  |.|       ||:      |.:.:.|:         |.....|:
 Frog   215 GRSPRRKYGGSPKQDDSHS--EGSCGQDYDDSPS------RVHASGNF---------NETYRKNM 262

  Fly   248 QVTVTNKQSISNRLRSPPPSSRSSGNGPRFGNSPRTPPPSHYSSSGGGGVGSGSVVRDSRSSRYV 312
                                           :||....|:.|.||      :.|....||..|.|
 Frog   263 -------------------------------DSPSYKEPAAYQSS------ARSPSPYSRKQRSV 290

  Fly   313 NSPHKEDVSAHHRSSHDHGYQGRYSGAGSSSHDTRKVKRLSPELDRYNHQPSTPPHKRRKFSDGR 377
             ||::...|::.|.|      |.|||...|.:..|:..  ||.:.|.:...|..|.|..|     
 Frog   291 -SPYRRRSSSYERGS------GSYSGRSPSPYVRRRSS--SPFVSRRSLSRSPAPRKSAK----- 341

  Fly   378 EVGLGNFEHSRHHSGKYERYSRDRYSRRSSRSPSVQHSRSRQSPSGGLSSGSNAFRHGGSHKHKY 442
                     ||..|..|.|.|..  |.||.:..|  .||||.|.........|            
 Frog   342 ---------SRSRSPLYPRKSSS--SSRSKKQKS--QSRSRHSSISPARLPLN------------ 381

  Fly   443 GTTVSSTPSHTTRTSKRASGTGTSGDRYSRSPRTSSRYMESSPPSPVGASGSHHYHHRRSPRMRQ 507
                ||..:..:|..|..:....:..|.|:.                            ||.:.:
 Frog   382 ----SSLGAELSRKKKEIAAAAAAAGRESKG----------------------------SPLILK 414

  Fly   508 RTRGDSRRRSPSSASSESSASRSRSPTS------------RDLKHKREEYIKKISETSLFAELVK 560
            :..||||..|.......:...:...|.|            :.:..|:||..||....:...::..
 Frog   415 KESGDSRVASALDLKKATKVLKLEKPVSEPEMVTATSSETKTISAKKEESEKKPQVQAKDPKISG 479

  Fly   561 DRHKRQKALKEIIERQEENSNSNSNGALTINDNSSSVDGNTPNAADGRSAPGSGTPAAASTTSN- 624
            .:..:..|:||.:              ||..:..:..|.:.|......|.|   .|...|..|| 
 Frog   480 LKDCKPAAIKEEV--------------LTPKEGVTDRDKDVPPLPPILSPP---PPLPTSPPSNI 527

  Fly   625 -GLQALGSKPDL------------DLNNIPMPNKQNDSVVS---------NPASNADVP-DSVAQ 666
             .|..|...|.:            .|..:|:|.....|:.|         :..:|:.:| .|.|:
 Frog   528 PPLPPLPPSPAVLQQPPPPLPPPPTLTFLPLPTTVAASLTSSHYVRQSSLSTQANSQLPVPSPAK 592

  Fly   667 LKQPL--LVPPFSASKNNIKPKSLTSLPLPP---GMNVLDLAGARSPSPGQKKESDEKNVTSSGS 726
            .:.||  :||       ::|..:|..|||||   |.:.::......|....|||.|:..      
 Frog   593 PQPPLIHMVP-------HMKTSTLPPLPLPPLLLGEDDIESPKEIPPPKSVKKEKDKDR------ 644

  Fly   727 ANKSVLNLPMPPVIPGSEELSGDDDVIDSPE-DFDAPAVGTVHGHGGGPGTTRQRPVILNRR--D 788
            ....:.:||:||.:||     ||....|||| ...||....:          ::||.|...|  :
 Frog   645 PRHLLTDLPLPPELPG-----GDPSPPDSPERKVVAPPQPPL----------KKRPKICCPRYGE 694

  Fly   789 SRNNVRDWGERCVDVFEMIAQIGEGTYGQVYKARDHHTNDMVALKKVRLEHEKEGFPITAVREIK 853
            .:....|||:||||.|::|..||||||||||||:|..|.::||||||||::|||||||||:||||
 Frog   695 RKQTETDWGKRCVDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIK 759

  Fly   854 ILRQLNHRNIVNLHEIVTDKQDAVEFRKDKGSFYLVFEYMDHDLMGLLESGMVDFNEENNASIMK 918
            |||||.|:::||:.|||||||||::|:||||:|||||||||||||||||||:|.|:|::..|.||
 Frog   760 ILRQLIHKSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVQFSEDHIKSFMK 824

  Fly   919 QLLDGLNYCHKKNFLHRDIKCSNILMNNRGKVKLADFGLARLYNADDRERPYTNKVITLWYRPPE 983
            ||::||.||||||||||||||||||:||.|::|||||||||||:::: .||||||||||||||||
 Frog   825 QLMEGLEYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYSSEE-SRPYTNKVITLWYRPPE 888

  Fly   984 LLLGEERYGPSIDVWSCGCILGELFVKRPLFQANAEMAQLETISKICGSPVPAVWPNVIKLPLFH 1048
            ||||||||.|:||||||||||||||.|:|:||||.|:||||.||::||||.|||||:|||||.|:
 Frog   889 LLLGEERYTPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRLCGSPCPAVWPDVIKLPYFN 953

  Fly  1049 TLKQKKTHRRRLREDFEFMPAPALDLLDKMLDLDPDKRITAEDALRSPWLRKINPDEMPTPQLPT 1113
            |:|.||.:||||||:|.|:|.|||||||.||.|||.||.|||..|:|.:|:.::..:|.||.||.
 Frog   954 TMKPKKQYRRRLREEFSFVPTPALDLLDHMLTLDPSKRCTAEQTLQSDFLKDVDVCKMATPDLPH 1018

  Fly  1114 WQDCHELWSKKRRRQMREQQESL----PPTVIASTK 1145
            |||||||||||||||   :|..:    ||.:.|..|
 Frog  1019 WQDCHELWSKKRRRQ---RQSGIVLEEPPAIKAPRK 1051

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdk12NP_001262167.1 STKc_CDK12 796..1098 CDD:270847 225/301 (75%)
S_TKc 804..1098 CDD:214567 219/293 (75%)
cdk12XP_012826946.1 STKc_CDK12 702..1003 CDD:270847 225/301 (75%)
S_TKc 710..1003 CDD:214567 219/293 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 465 1.000 Domainoid score I463
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 582 1.000 Inparanoid score I996
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D925637at2759
OrthoFinder 1 1.000 - - FOG0000444
OrthoInspector 1 1.000 - - otm48102
Panther 1 1.100 - - LDO PTHR24056
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R186
SonicParanoid 1 1.000 - - X546
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1111.100

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