DRSC/TRiP Functional Genomics Resources

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Protein Alignment M6 and gpm6a

DIOPT Version :9

Sequence 1:NP_001262166.1 Gene:M6 / 40383 FlyBaseID:FBgn0037092 Length:368 Species:Drosophila melanogaster
Sequence 2:NP_001072851.1 Gene:gpm6a / 780312 XenbaseID:XB-GENE-1000183 Length:278 Species:Xenopus tropicalis


Alignment Length:267 Identity:76/267 - (28%)
Similarity:130/267 - (48%) Gaps:31/267 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 ECCQSCMARIPYATLIATLMCLLGVGIFCFTMYRGASLTVIMVDQVFHLR---------LIWIEA 178
            |||..|:..||||:||||::...||.:||...:...:.||.::...|.:.         ...|:.
 Frog    16 ECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALTGTVNILQTYFEMARTAGDTLDVFTMIDI 80

  Fly   179 VQMIFVIIGAGMAALGFMILFVGFLATGATRYKVYRAWRSRVGGRISCAVLMGITYLLNFVWSLI 243
            .:.:...|.|.....|.:::..||..|||.: .:|..::....||...|..:.:|||....|..:
 Frog    81 FKYVIYGIAAAFFVYGILLMVEGFFTTGAIK-DLYGDFKITTCGRCVSAWFIMLTYLFMLAWLGV 144

  Fly   244 LCFLVVVTFIYTMFWNMC---TSVEHSQSCIDLTQFHFMFPPNTKLEDMKVCEKYE-IKAFCKDG 304
            ..|..:..::|...|.:|   |.|:.:..|:||.||..:    |..|:.|:|...: ....|   
 Frog   145 TAFTSLPVYMYFNLWTICRNATLVDEASFCLDLRQFGIV----TVGEEKKLCSSSDNFIRMC--- 202

  Fly   305 VENAEV-----MFILATLSTLLVLLSLVHYLMCLSANYAHIRDHEKFQELQEIQNLNELE----Y 360
             |:.|:     :||:|.......::::|||||.||||:|:::|..:.|:.::|::..|.|    :
 Frog   203 -ESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDACRMQKYEDIKSKEEQELHDIH 266

  Fly   361 SATSKDR 367
            |..||:|
 Frog   267 STRSKER 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
M6NP_001262166.1 Myelin_PLP 123..345 CDD:279599 68/239 (28%)
gpm6aNP_001072851.1 Myelin_PLP 14..247 CDD:396024 68/239 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 104 1.000 Domainoid score I6619
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H3864
Inparanoid 1 1.050 113 1.000 Inparanoid score I4706
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D390385at33208
OrthoFinder 1 1.000 - - FOG0001336
OrthoInspector 1 1.000 - - otm48187
Panther 1 1.100 - - O PTHR11683
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.160

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