DRSC/TRiP Functional Genomics Resources

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Protein Alignment M6 and plp1a

DIOPT Version :9

Sequence 1:NP_001262166.1 Gene:M6 / 40383 FlyBaseID:FBgn0037092 Length:368 Species:Drosophila melanogaster
Sequence 2:NP_783166.1 Gene:plp1a / 64264 ZFINID:ZDB-GENE-001202-1 Length:245 Species:Danio rerio


Alignment Length:248 Identity:64/248 - (25%)
Similarity:107/248 - (43%) Gaps:47/248 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 ECCQSCMARIPYATLIATLMCLLGVGIFCFTMYRGASLTVIMVDQVF------HLRLIW-IEAVQ 180
            |||..|:..:||.:|.|||:|..|:.:||...::..:.:..:::..|      :..|:: ||..|
Zfish     5 ECCMRCLGGVPYVSLAATLLCFSGIALFCGCGHQALTESERLIETYFARDNQDYYTLVYLIEYFQ 69

  Fly   181 MIFVIIGAGMAALGFM----ILFVGFLATGATRYKVYRAWRSRVGGRISCAVLMGITYLLNFVWS 241
            .|..    |:|:..|:    :|..||..|.|.|..: ..:||.|.||......:.|||.|..||.
Zfish    70 YIIY----GLASFFFLYCIVLLAEGFYTTSAVRQSL-GEFRSTVCGRCLSTTFIVITYFLVVVWL 129

  Fly   242 LILCFLVVVTFIYTMFWNM---CTSVEH--------SQSCIDLTQFHFMFPPNTKLED------- 288
            |:..   :..|....|:||   |.::..        :|.|||..|:..:  |.|.:..       
Zfish   130 LVFS---LSAFPVYFFYNMAKTCQTINFLSETPSSINQLCIDARQYGLL--PWTAIPGKACGMTL 189

  Fly   289 MKVCEKYEIKAFCKDGVENAEVMFILATLSTLLVLLSLVHYLMCLSANYAHIR 341
            ..||:..|......        ::|.|.....:.:|:|:.|.:..:.|:|.:|
Zfish   190 SNVCKTREFSLTYN--------LYIAAFAGAGMTVLALLTYTVSTTYNFAVLR 234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
M6NP_001262166.1 Myelin_PLP 123..345 CDD:279599 64/248 (26%)
plp1aNP_783166.1 Myelin_PLP 3..238 CDD:279599 64/248 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170575278
Domainoid 1 1.000 102 1.000 Domainoid score I6773
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 112 1.000 Inparanoid score I4839
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D390385at33208
OrthoFinder 1 1.000 - - FOG0001336
OrthoInspector 1 1.000 - - otm24778
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11683
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
99.000

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