DRSC/TRiP Functional Genomics Resources

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Protein Alignment M6 and GPM6A

DIOPT Version :9

Sequence 1:NP_001262166.1 Gene:M6 / 40383 FlyBaseID:FBgn0037092 Length:368 Species:Drosophila melanogaster
Sequence 2:NP_005268.1 Gene:GPM6A / 2823 HGNCID:4460 Length:278 Species:Homo sapiens


Alignment Length:267 Identity:79/267 - (29%)
Similarity:130/267 - (48%) Gaps:31/267 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 ECCQSCMARIPYATLIATLMCLLGVGIFCFTMYRGASLTVIMVDQVFHLR---------LIWIEA 178
            |||..|:..||||:||||::...||.:||...:...|.||.::...|.:.         ...|:.
Human    16 ECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTLDVFTMIDI 80

  Fly   179 VQMIFVIIGAGMAALGFMILFVGFLATGATRYKVYRAWRSRVGGRISCAVLMGITYLLNFVWSLI 243
            .:.:...|.|.....|.:::..||..|||.: .:|..::....||...|..:.:|||....|..:
Human    81 FKYVIYGIAAAFFVYGILLMVEGFFTTGAIK-DLYGDFKITTCGRCVSAWFIMLTYLFMLAWLGV 144

  Fly   244 LCFLVVVTFIYTMFWNMC---TSVEHSQSCIDLTQFHFMFPPNTKLEDMKVCEKYE-IKAFCKDG 304
            ..|..:..::|...|.:|   |.||.:..|:||.||..:    |..|:.|:|...| ....|   
Human   145 TAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIV----TIGEEKKICTVSENFLRMC--- 202

  Fly   305 VENAEV-----MFILATLSTLLVLLSLVHYLMCLSANYAHIRDHEKFQELQEIQNLNELE----Y 360
             |:.|:     :||:|.......::::|||||.||||:|:::|..:.|:.::|::..|.|    :
Human   203 -ESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDACRMQKYEDIKSKEEQELHDIH 266

  Fly   361 SATSKDR 367
            |..||:|
Human   267 STRSKER 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
M6NP_001262166.1 Myelin_PLP 123..345 CDD:279599 71/239 (30%)
GPM6ANP_005268.1 Myelin_PLP 14..247 CDD:396024 71/239 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165142559
Domainoid 1 1.000 106 1.000 Domainoid score I6572
eggNOG 1 0.900 - - E1_KOG4800
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3864
Inparanoid 1 1.050 115 1.000 Inparanoid score I4832
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D390385at33208
OrthoFinder 1 1.000 - - FOG0001336
OrthoInspector 1 1.000 - - otm40989
orthoMCL 1 0.900 - - OOG6_107551
Panther 1 1.100 - - LDO PTHR11683
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5557
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1413.790

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