DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hr78 and NR2C2

DIOPT Version :9

Sequence 1:NP_001189151.1 Gene:Hr78 / 40378 FlyBaseID:FBgn0015239 Length:601 Species:Drosophila melanogaster
Sequence 2:XP_011532360.1 Gene:NR2C2 / 7182 HGNCID:7972 Length:648 Species:Homo sapiens


Alignment Length:572 Identity:160/572 - (27%)
Similarity:253/572 - (44%) Gaps:132/572 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 VELCLVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGAMNCEVTKHHRNRCQFCRLQKCL 113
            ||.|:||||:||||||||:||||||||||||:||.|.|.||...:|.:.||||||||||||:|||
Human   166 VEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKKCL 230

  Fly   114 ASGMRSDSVQHERKPIVDRKEGIIAAAGSSSTSGGGNGSSTYLSGKSGYQQGRGKGHSVKAESAA 178
            ..||:.:|||.||||...::|                                            
Human   231 EMGMKMESVQSERKPFDVQRE-------------------------------------------- 251

  Fly   179 TPPVHSAPATAFNLNENIFPMGLNFAELTQTLMFATQQQQQQQQQHQQSGSYSPD--IPKADPED 241
             .|.:.|.:|     |.|:     ..:..::.:.||......:...:|:|...|.  :....|..
Human   252 -KPSNCAAST-----EKIY-----IRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQPLI 305

  Fly   242 DEDDSMDNSSTLCLQLLANSASNNNSQHLNFNAGEVPTALPTTSTMGLIQSSLDMRVIHKGLQIL 306
            .||.::         |||..:....||      |.:.|.....:::..:..||:           
Human   306 REDGTV---------LLATDSKAETSQ------GALGTLANVVTSLANLSESLN----------- 344

  Fly   307 QPIQNQLERNGNLS-VKPECDSEAEDSGTEDAVDAELEHMEL----DFECGGNRSGGSDFAI--- 363
                     ||:.| ::||..|.:|.:...|.:...|...:.    ....|.:.|||....:   
Human   345 ---------NGDTSEIQPEDQSASEITRAFDTLAKALNTTDSSSSPSLADGIDTSGGGSIHVISR 400

  Fly   364 --NEAVFEQD--LLTDVQCAFHVQPPTLVHSYLNIHYVCETGSRIIFLTIHTLRKVPVFEQLEAH 424
              :..:.|.:  ||:|....|.:..|:.:..|||:||:||:.||::||::|..|.:|.|:.|...
Human   401 DQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQD 465

  Fly   425 TQVKLLRGVWPALMAIALAQCQGQLSVPTIIGQFIQSTRQLADIDKIEPLKISKMANLTRTLHDF 489
            ....|:|..|..|..:.||||...:|:.||:...:...:.....||:...:|.::......|.:|
Human   466 CNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEF 530

  Fly   490 VQELQSLDVTDMEFGLLRLILLFNP-----------TLLQQRKERSLRGYVRRVQLYALSSLRRQ 543
            ...:..||:...|:..|:.|:||:|           ...|::.:..|:.||::..          
Human   531 CNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQDYVQKTY---------- 585

  Fly   544 GGIGGGEERFNV--LVARLLPLSSLDAEAMEELFFANLVGQMQMDALIPFIL 593
                 .|:.:.:  ::.||..|..:.:...|||||..|:|.:.:|::||:||
Human   586 -----SEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYIL 632

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr78NP_001189151.1 NR_DBD_TR2_like 47..133 CDD:143525 58/83 (70%)
NR_LBD_TR2_like 372..595 CDD:132750 65/235 (28%)
NR2C2XP_011532360.1 NR_DBD_TR2_like 164..250 CDD:143525 58/83 (70%)
NR_LBD_TR2_like 413..634 CDD:132750 65/235 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165144388
Domainoid 1 1.000 125 1.000 Domainoid score I5494
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 258 1.000 Inparanoid score I3142
Isobase 1 0.950 - 0 Normalized mean entropy S7185
OMA 1 1.010 - - QHG45830
OrthoDB 1 1.010 - - D145512at33208
OrthoFinder 1 1.000 - - FOG0002998
OrthoInspector 1 1.000 - - otm40297
orthoMCL 1 0.900 - - OOG6_106195
Panther 1 1.100 - - O PTHR24083
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1991
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1413.820

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