DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hr78 and RXRB

DIOPT Version :9

Sequence 1:NP_001189151.1 Gene:Hr78 / 40378 FlyBaseID:FBgn0015239 Length:601 Species:Drosophila melanogaster
Sequence 2:NP_001257330.1 Gene:RXRB / 6257 HGNCID:10478 Length:537 Species:Homo sapiens


Alignment Length:606 Identity:132/606 - (21%)
Similarity:192/606 - (31%) Gaps:273/606 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 NRAMPLIGGGSASG-------------GTPLPGGGVGMGAGASATLSVELCLVCGDRASGRHYGA 66
            |..:.|.||||...             ..|.|.||.|.|.        .||.:||||:||:|||.
Human   163 NSTVSLPGGGSGPPEDVKPPVLGVRGLHCPPPPGGPGAGK--------RLCAICGDRSSGKHYGV 219

  Fly    67 ISCEGCKGFFKRSIRKQLGYQCRGAMNCEVTKHHRNRCQFCRLQKCLASGMRSDSVQHERKPIVD 131
            .|||||||||||:|||.|.|.||...:|.|.|..|||||:||.|||||:||:.::||.||:    
Human   220 YSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQ---- 280

  Fly   132 RKEGIIAAAGSSSTSGGGNGSSTYLSGKSGYQQGRGKGHSVKAESAATPPVHSAPATAFNLNENI 196
                                              |||                            
Human   281 ----------------------------------RGK---------------------------- 283

  Fly   197 FPMGLNFAELTQTLMFATQQQQQQQQQHQQSGSYSPDIPKADPEDDEDDSMDNSSTLCLQLLANS 261
                                                     |.:.|.:                 
Human   284 -----------------------------------------DKDGDGE----------------- 290

  Fly   262 ASNNNSQHLNFNAGEVPTALPTTSTMGLIQSSLDMRVIHKGLQILQPIQNQLERNGNLSVKPECD 326
                       .||..|..:|..            |::...|.:                     
Human   291 -----------GAGGAPEEMPVD------------RILEAELAV--------------------- 311

  Fly   327 SEAEDSGTEDAVDAELEHMELDFECGGNRSGGSDFAINEAVFEQDLLTDVQCAFHVQPPTLVHSY 391
            .:..|.|.|                |...:|||..:.|:.|..                      
Human   312 EQKSDQGVE----------------GPGGTGGSGSSPNDPVTN---------------------- 338

  Fly   392 LNIHYVCETGSRIIFLTIHTLRKVPVFEQLEAHTQVKLLRGVWPALMAIALAQCQGQLSVPTIIG 456
                 :|:...:.:|..:...:::|.|..|....||.|||..|..|:..:.:.....:....::.
Human   339 -----ICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 398

  Fly   457 QFIQSTRQLAD-------IDKIEPLKISKMANLTRTLHDFVQELQSLDVTDMEFGLLRLILLFNP 514
            ..:...|..|.       .|:          :|:|.|.:.|.:::.:.:...|.|.||.|:||||
Human   399 TGLHVHRNSAHSAGVGAIFDR----------SLSRVLTELVSKMRDMRMDKTELGCLRAIILFNP 453

  Fly   515 -----------TLLQQRKERSLRGYVRRVQLYALSSLRRQGGIGGGEERFNVLVARLLPLSSLDA 568
                       .:|:::...||..|.:  |.|.    .:||       ||..|:.||..|.|:..
Human   454 DAKGLSNPSEVEVLREKVYASLETYCK--QKYP----EQQG-------RFAKLLLRLPALRSIGL 505

  Fly   569 EAMEELFFANLVGQMQMDALI 589
            :.:|.|||..|:|...:|..:
Human   506 KCLEHLFFFKLIGDTPIDTFL 526

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr78NP_001189151.1 NR_DBD_TR2_like 47..133 CDD:143525 50/85 (59%)
NR_LBD_TR2_like 372..595 CDD:132750 50/236 (21%)
RXRBNP_001257330.1 Modulating. /evidence=ECO:0000250 1..204 12/48 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 36..181 6/17 (35%)
NR_DBD_RXR 204..279 CDD:143514 48/74 (65%)
Hinge 271..295 11/158 (7%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 276..299 11/157 (7%)
NR_LBD_RXR_like 298..515 CDD:132741 59/315 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 313..336 8/38 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165144382
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.840

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