DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr78 and nr2f6

DIOPT Version :10

Sequence 1:NP_730636.1 Gene:Hr78 / 40378 FlyBaseID:FBgn0015239 Length:601 Species:Drosophila melanogaster
Sequence 2:NP_001004841.1 Gene:nr2f6 / 448119 XenbaseID:XB-GENE-480818 Length:389 Species:Xenopus tropicalis


Alignment Length:48 Identity:13/48 - (27%)
Similarity:24/48 - (50%) Gaps:8/48 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 FSHPGDFTPVCTTEL-----GAMAKYAHEFDK--RGVK-LLGLSCDDV 75
            |:.|...||..|.|.     ..::.||.:.:|  :|:: ||.::..|:
 Frog   117 FTRPPRETPTLTHETFKALKPGLSAYADDVEKSAQGIRELLDVAKQDI 164

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr78NP_730636.1 NR_DBD_TR2_like 47..133 CDD:143525 9/37 (24%)
NR_LBD_TR2_like 372..595 CDD:132750
nr2f6NP_001004841.1 NR_DBD_COUP_TF 54..126 CDD:143516 3/8 (38%)
NR_LBD_COUP-TF 152..388 CDD:132746 4/13 (31%)
Blue background indicates that the domain is not in the aligned region.

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