DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr78 and svp

DIOPT Version :9

Sequence 1:NP_001189151.1 Gene:Hr78 / 40378 FlyBaseID:FBgn0015239 Length:601 Species:Drosophila melanogaster
Sequence 2:NP_001369011.1 Gene:svp / 41491 FlyBaseID:FBgn0003651 Length:826 Species:Drosophila melanogaster


Alignment Length:655 Identity:144/655 - (21%)
Similarity:220/655 - (33%) Gaps:294/655 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 IKSEENRAMPLIGGGSASGGTPLPGGGVGMGAG-------------------------------A 43
            ||.:.:.::|...||||.|..  .|.|.|.|:|                               .
  Fly   108 IKEDLSSSLPSANGGSAGGHH--SGSGSGSGSGVNPGHGSDMLPLIKGHGQDMLTSIKGQPTGCG 170

  Fly    44 SATLSVEL---------------------CLVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYQ 87
            |.|.|.:.                     |:||||::||:|||..:|||||.|||||:|:.|.|.
  Fly   171 STTPSSQANSSHSQSSNSGSQIDSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYS 235

  Fly    88 CRGAMNCEVTKHHRNRCQFCRLQKCLASGMRSDSVQHERKPIVDRKEGIIAAAGSSSTSGGGNGS 152
            |||:.||.:.:||||:||:|||:|||..|||.::||..|.|               .|..|    
  Fly   236 CRGSRNCPIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVP---------------PTQPG---- 281

  Fly   153 STYLSGKSG-YQQGRGKGHSVKAESAATPPVHSAPATAFNLNENIFPMGL-NFAELTQTLMFATQ 215
               |:|..| ||...|.                             |||: .|            
  Fly   282 ---LAGMHGQYQIANGD-----------------------------PMGIAGF------------ 302

  Fly   216 QQQQQQQQHQQSGSYSPDIPKADPEDDEDDSMDNSSTLCLQLLANSASNNNSQHLNFNAGEVPTA 280
                  ..|....||...:.:|:|                                         
  Fly   303 ------NGHSYLSSYISLLLRAEP----------------------------------------- 320

  Fly   281 LPTTSTMGLIQSSLDMRVIHKGLQILQPIQNQLERNGNLSVKPECDSEAEDSGTEDAVDAELEHM 345
            .||                                                              
  Fly   321 YPT-------------------------------------------------------------- 323

  Fly   346 ELDFECGGNRSGGSDFAINEAVFEQDLLTDVQCAFHVQPPTLVHSYLNIHYVCETGSRIIFLTIH 410
                    :|.|                   ||   :||    ::.:.|..:||..:|::|..:.
  Fly   324 --------SRYG-------------------QC---MQP----NNIMGIDNICELAARLLFSAVE 354

  Fly   411 TLRKVPVFEQLEAHTQVKLLRGVWPALMAIALAQCQGQLSV-PTIIGQFIQSTRQLADIDKIEPL 474
            ..:.:|.|.:|:...||.|||.||..|..:..:||...|.| |.:....:.::...||       
  Fly   355 WAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAAD------- 412

  Fly   475 KISKMANLTRTLHDFVQELQSLDVTDMEFGLLRLILLFNPTL-----------LQQRKERSLRGY 528
            ::....:..|...:.|::|::|.|...|:..|:.|:||....           ||::.:.:|..|
  Fly   413 RVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEY 477

  Fly   529 VRRVQLYALSSLRRQGGIGGGEERFNVLVARLLPLSSLDAEAMEELFFANLVGQMQMDALIPFIL 593
            .|       :....|      ..||..|:.||..|.::.::.:|:|||..|||:..::.||..:|
  Fly   478 CR-------TQYPNQ------PTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDML 529

  Fly   594 MTSNT 598
            ::.|:
  Fly   530 LSGNS 534

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr78NP_001189151.1 NR_DBD_TR2_like 47..133 CDD:143525 48/106 (45%)
NR_LBD_TR2_like 372..595 CDD:132750 59/234 (25%)
svpNP_001369011.1 NR_DBD_COUP_TF 200..272 CDD:143516 44/71 (62%)
NR_LBD_COUP-TF 307..542 CDD:132746 68/385 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24083
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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