DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr78 and Hr83

DIOPT Version :10

Sequence 1:NP_730636.1 Gene:Hr78 / 40378 FlyBaseID:FBgn0015239 Length:601 Species:Drosophila melanogaster
Sequence 2:NP_649647.1 Gene:Hr83 / 40783 FlyBaseID:FBgn0037436 Length:278 Species:Drosophila melanogaster


Alignment Length:172 Identity:56/172 - (32%)
Similarity:80/172 - (46%) Gaps:43/172 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 CLVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGAM-NCEVTKHHRNRCQFCRLQKCLAS 115
            |.||||::||:|||...|:||..|||||:|:...|.|...: ||.|.|..||.|..||.|:|||.
  Fly     7 CAVCGDQSSGKHYGVSCCDGCSCFFKRSVRRGSSYACIALVGNCVVDKARRNWCPSCRFQRCLAV 71

  Fly   116 GMRSDSVQHERKPIVDRKEGIIAAAGSSSTSGGGNGSSTYLSGKSGYQQGRGKGHSVKAESAATP 180
            ||.:.:||.||.|   |.:.:..                       |:.||.:  :..:::|.:|
  Fly    72 GMNAAAVQEERGP---RNQQVAL-----------------------YRTGRRQ--APPSQAAPSP 108

  Fly   181 PVHSAPATAFNLNENIFPMGLNFAELTQTLMFATQQQQQQQQ 222
            ..||              ..|:|..|.|.|:...:|.:..:|
  Fly   109 TPHS--------------QALHFQILAQILVTCLRQAKANEQ 136

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr78NP_730636.1 NR_DBD_TR2_like 47..133 CDD:143525 41/81 (51%)
NR_LBD_TR2_like 372..595 CDD:132750
Hr83NP_649647.1 NR_DBD_PNR_like_2 7..88 CDD:143515 42/83 (51%)
Blue background indicates that the domain is not in the aligned region.

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