DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr78 and nr2f6b

DIOPT Version :9

Sequence 1:NP_001189151.1 Gene:Hr78 / 40378 FlyBaseID:FBgn0015239 Length:601 Species:Drosophila melanogaster
Sequence 2:XP_021335261.1 Gene:nr2f6b / 406522 ZFINID:ZDB-GENE-040426-2351 Length:409 Species:Danio rerio


Alignment Length:600 Identity:138/600 - (23%)
Similarity:200/600 - (33%) Gaps:236/600 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DGVKVETFIKSEENRAMPLIGGGSASGGTPLPGGGVGMGAGASATLSVELCLVCGDRASGRHYGA 66
            :|:..:.:::.||..:.|..|.....|             |......|..|:||||::||:|||.
Zfish    16 NGLGEKGYLRGEEEGSSPQAGNSDVEG-------------GEEDKACVVDCVVCGDKSSGKHYGV 67

  Fly    67 ISCEGCKGFFKRSIRKQLGYQCRGAMNCEVTKHHRNRCQFCRLQKCLASGMRSDSVQHERKPIVD 131
            .:|||||.|||||||:.|.|.||....|::.:||||:||:|||:||...|||.:.   ::.|.|.
Zfish    68 FTCEGCKSFFKRSIRRNLNYTCRSNRECQIDQHHRNQCQYCRLKKCFRVGMRKEG---QQTPTVQ 129

  Fly   132 RKEGIIAAAGSSSTSGGGNGSSTYLSGKSGYQQGRGKGHSVKAESAATPPVHSAPATAFNLNENI 196
            |.....:.||.|..|..|.|      |..|...|.|                   |..||     
Zfish   130 RGRIPPSHAGISPASMVGAG------GDVGGGPGMG-------------------ADFFN----- 164

  Fly   197 FPMGLNFAELTQTLMFATQQQQQQQQQHQQSGSYSPDIPKADPEDDEDDSMDNSSTLCLQLLANS 261
               |...:||...|:                        :|:|..                    
Zfish   165 ---GQPVSELISQLL------------------------RAEPYP-------------------- 182

  Fly   262 ASNNNSQHLNFNAGEVPTALPTTSTMGLIQSSLDMRVIHKGLQILQPIQNQLERNGNLSVKPECD 326
                ||::                                |.|                      
Zfish   183 ----NSRY--------------------------------GAQ---------------------- 189

  Fly   327 SEAEDSGTEDAVDAELEHMELDFECGGNRSGGSDFAINEAVFEQDLLTDVQCAFHVQPPTLVHSY 391
                                    ||....|.:.                             |.
Zfish   190 ------------------------CGQQLQGANS-----------------------------SM 201

  Fly   392 LNIHYVCETGSRIIFLTIHTLRKVPVFEQLEAHTQVKLLRGVWPALMAIALAQCQGQL-SVPTII 455
            :.|..:||..:|::|.||...|.:|.|..|....||.|||..|..|..:..||....| :.|.:.
Zfish   202 MGIDNICELAARLLFSTIEWARNIPYFPDLPVSEQVALLRLSWSELFILNAAQSALPLHTAPLLA 266

  Fly   456 GQFIQSTRQLADIDKIEPLKISKMANLTRTLHDFVQELQSLDVTDMEFGLLRLILLFNPTL---- 516
            .....|:...||       ::....:..|...|.|.:|..|.|..:|:..|:.|.||:|..    
Zfish   267 AAGFHSSPMPAD-------RVVSFMDQVRVFQDQVDKLTRLQVDSVEYSCLKAIALFSPDACGLS 324

  Fly   517 -------LQQRKERSLRGYVRRVQLYALSSLRRQGGIGGGEERFNVLVARLLPLSSLDAEAMEEL 574
                   ||::.:.:|..| .|:|            ..|..:||..|:.||..|.::.|..:.:|
Zfish   325 DPAHVESLQEKAQVALTEY-ERMQ------------YPGQPQRFGRLLLRLPALRAVPANLISQL 376

  Fly   575 FFANLVGQMQMDALI 589
            ||..|||:..::.||
Zfish   377 FFMRLVGKTPIETLI 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr78NP_001189151.1 NR_DBD_TR2_like 47..133 CDD:143525 44/85 (52%)
NR_LBD_TR2_like 372..595 CDD:132750 59/229 (26%)
nr2f6bXP_021335261.1 NR_DBD_COUP_TF 53..124 CDD:143516 41/73 (56%)
NR_LBD_COUP-TF 167..408 CDD:132746 71/399 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170577471
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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