Protein Alignment Hr78 and Rxrb

DIOPT Version :9

• Sequence 1: NP_001189151.1
• Gene: Hr78 / 40378
• FlyBaseID: FBgn0015239
• Length: 601
• Species: Drosophila melanogaster
• Sequence 2: XP_006256022.1
• Gene: Rxrb / 361801
• RGDID: 3611
• Length: 689
• Species: Rattus norvegicus
• Alignment Length: 606
• Identity: 133/606 - (21%)
• Similarity: 192/606 - (31%)
• Gaps: 273/606 - (45%)

  Fly    15 NRAMPLIGGGSASG-------------GTPLPGGGVGMGAGASATLSVELCLVCGDRASGRHYGA 66
            |..:.|.||||...             ..|.|.||.|.|.        .||.:||||:||:|||.
  Rat   315 NSTVSLPGGGSGPPEDVKPPVLGVRGLHCPPPPGGPGAGK--------RLCAICGDRSSGKHYGV 371

  Fly    67 ISCEGCKGFFKRSIRKQLGYQCRGAMNCEVTKHHRNRCQFCRLQKCLASGMRSDSVQHERKPIVD 131
            .|||||||||||:|||.|.|.||...:|.|.|..|||||:||.|||||:||:.::||.||:
  Rat   372 YSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQ---- 432

  Fly   132 RKEGIIAAAGSSSTSGGGNGSSTYLSGKSGYQQGRGKGHSVKAESAATPPVHSAPATAFNLNENI 196
                                              |||
  Rat   433 ----------------------------------RGK---------------------------- 435

  Fly   197 FPMGLNFAELTQTLMFATQQQQQQQQQHQQSGSYSPDIPKADPEDDEDDSMDNSSTLCLQLLANS 261
                                                     |.:.|.|
  Rat   436 -----------------------------------------DKDGDGD----------------- 442

  Fly   262 ASNNNSQHLNFNAGEVPTALPTTSTMGLIQSSLDMRVIHKGLQILQPIQNQLERNGNLSVKPECD 326
                       .||..|..:|..            |::...|.:
  Rat   443 -----------GAGGAPEEMPVD------------RILEAELAV--------------------- 463

  Fly   327 SEAEDSGTEDAVDAELEHMELDFECGGNRSGGSDFAINEAVFEQDLLTDVQCAFHVQPPTLVHSY 391
            .:..|.|.|                |...:|||..:.|:.|..
  Rat   464 EQKSDQGVE----------------GPGGTGGSGSSPNDPVTN---------------------- 490

  Fly   392 LNIHYVCETGSRIIFLTIHTLRKVPVFEQLEAHTQVKLLRGVWPALMAIALAQCQGQLSVPTIIG 456
                 :|:...:.:|..:...:::|.|..|....||.|||..|..|:..:.:.....:....::.
  Rat   491 -----ICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 550

  Fly   457 QFIQSTRQLAD-------IDKIEPLKISKMANLTRTLHDFVQELQSLDVTDMEFGLLRLILLFNP 514
            ..:...|..|.       .|:          :|:|.|.:.|.:::.:.:...|.|.||.|:||||
  Rat   551 TGLHVHRNSAHSAGVGAIFDR----------SLSRVLTELVSKMRDMRMDKTELGCLRAIILFNP 605

  Fly   515 -----------TLLQQRKERSLRGYVRRVQLYALSSLRRQGGIGGGEERFNVLVARLLPLSSLDA 568
                       .:|:::...||..|.:  |.|.    .:||       ||..|:.||..|.|:..
  Rat   606 DAKGLSNPGEVEILREKVYASLETYCK--QKYP----EQQG-------RFAKLLLRLPALRSIGL 657

  Fly   569 EAMEELFFANLVGQMQMDALI 589
            :.:|.|||..|:|...:|..:
  Rat   658 KCLEHLFFFKLIGDTPIDTFL 678

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hr78	NP_001189151.1	NR_DBD_TR2_like	47..133	CDD:143525	50/85 (59%)
		NR_LBD_TR2_like	372..595	CDD:132750	50/236 (21%)
Rxrb	XP_006256022.1	NR_DBD_RXR	356..431	CDD:143514	48/74 (65%)
		NR_LBD_RXR_like	450..667	CDD:132741	59/315 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C166338099
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.840