DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr78 and Hnf4g

DIOPT Version :9

Sequence 1:NP_001189151.1 Gene:Hr78 / 40378 FlyBaseID:FBgn0015239 Length:601 Species:Drosophila melanogaster
Sequence 2:XP_006530135.1 Gene:Hnf4g / 30942 MGIID:1353604 Length:462 Species:Mus musculus


Alignment Length:547 Identity:106/547 - (19%)
Similarity:178/547 - (32%) Gaps:234/547 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 LCLVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGAMNCEVTKHHRNRCQFCRLQKCLAS 115
            ||.:|||||:|:||||.||:||||||:|||||...|.||.:..|.|.|..||:|::|||:||..:
Mouse    65 LCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRYCRLRKCFRA 129

  Fly   116 GMRSDSVQHERKPIVDRKEGIIAAAGSSSTSGGGNGSSTYLSGKSGYQQGRGKGHSVKAESAATP 180
            ||:.::||:||..|..|:                   |||                         
Mouse   130 GMKKEAVQNERDRISTRR-------------------STY------------------------- 150

  Fly   181 PVHSAPATAFNLNENIFPMGLNFAELTQTLMFATQQQQQQQQQHQQSGSYSPDIPKADPEDDEDD 245
                                                          .||..|.|           
Mouse   151 ----------------------------------------------EGSNIPSI----------- 158

  Fly   246 SMDNSSTLCLQLLANSASNNNSQHLNFNAGEVPTALPTTSTMGLIQSSLDMRVIHKGLQILQPIQ 310
                               |........:.::....|::||                        
Mouse   159 -------------------NTLAQAEVRSCQISVPSPSSST------------------------ 180

  Fly   311 NQLERNGNLSVKPECDSEAEDSGTEDAVDAELEHMELDFECGGNRSGGSDFAINEAVFEQDLLTD 375
                   ::::|                                                     
Mouse   181 -------DINIK----------------------------------------------------- 185

  Fly   376 VQCAFHVQPPTLVHSYLNIHYVCETGSRIIFLTIHTLRKVPVFEQLEAHTQVKLLRGVWPALMAI 440
                          ...:|..|||:..:.:.:.:...:.:|.|.:|....||.|||......:.:
Mouse   186 --------------KIASISDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLL 236

  Fly   441 ALAQCQGQLSVPTIIGQFIQSTRQLADIDKIEPLKISKMANLTRTLHDFVQELQSLDVTDMEFGL 505
            ...:.........::|......|...:::      :|::||  |.|.:.|:..|.:.:.|.|:..
Mouse   237 GATKRSMMYKDILLLGNHYVIHRNSCEVE------VSRVAN--RVLDELVRPFQEIQIDDNEYAC 293

  Fly   506 LRLILLFNPT---LLQQRKERSLRGYVRRVQLYALSSLRRQGGIGGGEERFNVLVARLLPLSSLD 567
            |:.|:.|:|.   |....|.:::|..| ::.|....:.|:....|    ||..|:..|..|.|:.
Mouse   294 LKAIVFFDPDAKGLSDPVKIKNMRFQV-QISLEDYINDRQYDSRG----RFGELLLLLPTLQSIT 353

  Fly   568 AEAMEELFFANLVGQMQMDALIPFILM 594
            .:.:|::.|..|.|.:::|.|:..:|:
Mouse   354 WQMIEQIQFVKLFGMVKIDNLLQEMLL 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr78NP_001189151.1 NR_DBD_TR2_like 47..133 CDD:143525 46/81 (57%)
NR_LBD_TR2_like 372..595 CDD:132750 47/226 (21%)
Hnf4gXP_006530135.1 NR_DBD_HNF4A 66..141 CDD:143518 43/74 (58%)
NR_LBD_HNF4_like 157..378 CDD:132729 52/361 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167834525
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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