Protein Alignment Hr78 and Rxra

DIOPT Version :9

• Sequence 1: NP_001189151.1
• Gene: Hr78 / 40378
• FlyBaseID: FBgn0015239
• Length: 601
• Species: Drosophila melanogaster
• Sequence 2: XP_038960270.1
• Gene: Rxra / 25271
• RGDID: 3610
• Length: 507
• Species: Rattus norvegicus
• Alignment Length: 564
• Identity: 127/564 - (22%)
• Similarity: 189/564 - (33%)
• Gaps: 251/564 - (44%)

  Fly    41 AGASATLSVELCLVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGAMNCEVTKHHRNRCQ 105
            :|..::.:..:|.:||||:||:|||..|||||||||||::||.|.|.||...:|.:.|..|||||
  Rat   169 SGNMSSFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQ 233

  Fly   106 FCRLQKCLASGMRSDSVQHERKPIVDRKEGIIAAAGSSSTSGGGNGSSTYLSGKSGYQQGRGKGH 170
            :||.|||||.||:.::||.||:                                      |||
  Rat   234 YCRYQKCLAMGMKREAVQEERQ--------------------------------------RGK-- 258

  Fly   171 SVKAESAATPPVHSAPATAFNLNENIFPMGLNFAELTQTLMFATQQQQQQQQQHQQSGSYSPDIP 235
                                :.|||
  Rat   259 --------------------DRNEN---------------------------------------- 263

  Fly   236 KADPEDDEDDSMDNSSTLCLQLLANSASNNNSQHLNFNAGEVPTALPTTSTMGLIQSSLDMRVIH 300
                                ::.:.|::|.                             ||
  Rat   264 --------------------EVESTSSANE-----------------------------DM---- 275

  Fly   301 KGLQILQPIQNQLERNGNLSVKPECDSEAEDSGTEDAVDAELEHMELDFECGGNRSGGSDFAINE 365
                   |::..||  ..|:|:|:         ||..|:|.:         |.|.|..:|...|
  Rat   276 -------PVEKILE--AELAVEPK---------TETYVEANM---------GLNPSSPNDPVTN- 312

  Fly   366 AVFEQDLLTDVQCAFHVQPPTLVHSYLNIHYVCETGSRIIFLTIHTLRKVPVFEQLEAHTQVKLL 430
                                           :|:...:.:|..:...:::|.|.:|....||.||
  Rat   313 -------------------------------ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILL 346

  Fly   431 RGVWPALMAIALAQCQGQLSVPTIIGQFIQSTRQLADIDKI---EPLKISKM--------ANLTR 484
            |..|..|                :|..|  |.|.:|..|.|   ..|.:.:.        |...|
  Rat   347 RAGWNEL----------------LIASF--SHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDR 393

  Fly   485 TLHDFVQELQSLDVTDMEFGLLRLILLFNPT---LLQQRKERSLRGYV-RRVQLYALSSLRRQGG 545
            .|.:.|.:::.:.:...|.|.||.|:||||.   |....:..:||..| ..::.|.......|.|
  Rat   394 VLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPG 458

  Fly   546 IGGGEERFNVLVARLLPLSSLDAEAMEELFFANLVGQMQMDALI 589
                  ||..|:.||..|.|:..:.:|.|||..|:|...:|..:
  Rat   459 ------RFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFL 496

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hr78	NP_001189151.1	NR_DBD_TR2_like	47..133	CDD:143525	47/85 (55%)
		NR_LBD_TR2_like	372..595	CDD:132750	54/233 (23%)
Rxra	XP_038960270.1	Nuc_recep-AF1	58..171	CDD:403126	0/1 (0%)
		NR_DBD_RXR	178..254	CDD:143514	45/75 (60%)
		NR_LBD_RXR_like	274..485	CDD:132741	68/297 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C166338104
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.840