Sequence 1: | NP_001189151.1 | Gene: | Hr78 / 40378 | FlyBaseID: | FBgn0015239 | Length: | 601 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_035435.1 | Gene: | Rxra / 20181 | MGIID: | 98214 | Length: | 467 | Species: | Mus musculus |
Alignment Length: | 564 | Identity: | 128/564 - (22%) |
---|---|---|---|
Similarity: | 189/564 - (33%) | Gaps: | 251/564 - (44%) |
- Green bases have known domain annotations that are detailed below.
Fly 41 AGASATLSVELCLVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGAMNCEVTKHHRNRCQ 105
Fly 106 FCRLQKCLASGMRSDSVQHERKPIVDRKEGIIAAAGSSSTSGGGNGSSTYLSGKSGYQQGRGKGH 170
Fly 171 SVKAESAATPPVHSAPATAFNLNENIFPMGLNFAELTQTLMFATQQQQQQQQQHQQSGSYSPDIP 235
Fly 236 KADPEDDEDDSMDNSSTLCLQLLANSASNNNSQHLNFNAGEVPTALPTTSTMGLIQSSLDMRVIH 300
Fly 301 KGLQILQPIQNQLERNGNLSVKPECDSEAEDSGTEDAVDAELEHMELDFECGGNRSGGSDFAINE 365
Fly 366 AVFEQDLLTDVQCAFHVQPPTLVHSYLNIHYVCETGSRIIFLTIHTLRKVPVFEQLEAHTQVKLL 430
Fly 431 RGVWPALMAIALAQCQGQLSVPTIIGQFIQSTRQLADIDKI---EPLKISKM--------ANLTR 484
Fly 485 TLHDFVQELQSLDVTDMEFGLLRLILLFNPT---LLQQRKERSLRGYV-RRVQLYALSSLRRQGG 545
Fly 546 IGGGEERFNVLVARLLPLSSLDAEAMEELFFANLVGQMQMDALI 589 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Hr78 | NP_001189151.1 | NR_DBD_TR2_like | 47..133 | CDD:143525 | 47/85 (55%) |
NR_LBD_TR2_like | 372..595 | CDD:132750 | 54/233 (23%) | ||
Rxra | NP_035435.1 | Modulating domain. /evidence=ECO:0000250 | 1..139 | 2/9 (22%) | |
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..112 | ||||
Nuc_recep-AF1 | 18..131 | CDD:288658 | 0/1 (0%) | ||
NR_DBD_RXR | 138..214 | CDD:143514 | 45/75 (60%) | ||
Nuclear localization signal. /evidence=ECO:0000250|UniProtKB:P19793 | 165..170 | 2/4 (50%) | |||
Hinge | 206..229 | 10/142 (7%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 211..233 | 10/141 (7%) | |||
NR_LBD_RXR_like | 234..445 | CDD:132741 | 68/297 (23%) | ||
Required for nuclear export. /evidence=ECO:0000250|UniProtKB:P19793 | 353..373 | 4/19 (21%) | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C167834526 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.840 |