DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr78 and Rxra

DIOPT Version :9

Sequence 1:NP_001189151.1 Gene:Hr78 / 40378 FlyBaseID:FBgn0015239 Length:601 Species:Drosophila melanogaster
Sequence 2:NP_035435.1 Gene:Rxra / 20181 MGIID:98214 Length:467 Species:Mus musculus


Alignment Length:564 Identity:128/564 - (22%)
Similarity:189/564 - (33%) Gaps:251/564 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 AGASATLSVELCLVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGAMNCEVTKHHRNRCQ 105
            :|..|:.:..:|.:||||:||:|||..|||||||||||::||.|.|.||...:|.:.|..|||||
Mouse   129 SGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQ 193

  Fly   106 FCRLQKCLASGMRSDSVQHERKPIVDRKEGIIAAAGSSSTSGGGNGSSTYLSGKSGYQQGRGKGH 170
            :||.|||||.||:.::||.||:                                      |||  
Mouse   194 YCRYQKCLAMGMKREAVQEERQ--------------------------------------RGK-- 218

  Fly   171 SVKAESAATPPVHSAPATAFNLNENIFPMGLNFAELTQTLMFATQQQQQQQQQHQQSGSYSPDIP 235
                                :.|||                                        
Mouse   219 --------------------DRNEN---------------------------------------- 223

  Fly   236 KADPEDDEDDSMDNSSTLCLQLLANSASNNNSQHLNFNAGEVPTALPTTSTMGLIQSSLDMRVIH 300
                                ::.:.|::|.                             ||    
Mouse   224 --------------------EVESTSSANE-----------------------------DM---- 235

  Fly   301 KGLQILQPIQNQLERNGNLSVKPECDSEAEDSGTEDAVDAELEHMELDFECGGNRSGGSDFAINE 365
                   |::..||  ..|:|:|:         ||..|:|.:         |.|.|..:|...| 
Mouse   236 -------PVEKILE--AELAVEPK---------TETYVEANM---------GLNPSSPNDPVTN- 272

  Fly   366 AVFEQDLLTDVQCAFHVQPPTLVHSYLNIHYVCETGSRIIFLTIHTLRKVPVFEQLEAHTQVKLL 430
                                           :|:...:.:|..:...:::|.|.:|....||.||
Mouse   273 -------------------------------ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILL 306

  Fly   431 RGVWPALMAIALAQCQGQLSVPTIIGQFIQSTRQLADIDKI---EPLKISKM--------ANLTR 484
            |..|..|                :|..|  |.|.:|..|.|   ..|.:.:.        |...|
Mouse   307 RAGWNEL----------------LIASF--SHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDR 353

  Fly   485 TLHDFVQELQSLDVTDMEFGLLRLILLFNPT---LLQQRKERSLRGYV-RRVQLYALSSLRRQGG 545
            .|.:.|.:::.:.:...|.|.||.|:||||.   |....:..:||..| ..::.|.......|.|
Mouse   354 VLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPG 418

  Fly   546 IGGGEERFNVLVARLLPLSSLDAEAMEELFFANLVGQMQMDALI 589
                  ||..|:.||..|.|:..:.:|.|||..|:|...:|..:
Mouse   419 ------RFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFL 456

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr78NP_001189151.1 NR_DBD_TR2_like 47..133 CDD:143525 47/85 (55%)
NR_LBD_TR2_like 372..595 CDD:132750 54/233 (23%)
RxraNP_035435.1 Modulating domain. /evidence=ECO:0000250 1..139 2/9 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..112
Nuc_recep-AF1 18..131 CDD:288658 0/1 (0%)
NR_DBD_RXR 138..214 CDD:143514 45/75 (60%)
Nuclear localization signal. /evidence=ECO:0000250|UniProtKB:P19793 165..170 2/4 (50%)
Hinge 206..229 10/142 (7%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 211..233 10/141 (7%)
NR_LBD_RXR_like 234..445 CDD:132741 68/297 (23%)
Required for nuclear export. /evidence=ECO:0000250|UniProtKB:P19793 353..373 4/19 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167834526
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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