DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr78 and nr2f5

DIOPT Version :9

Sequence 1:NP_001189151.1 Gene:Hr78 / 40378 FlyBaseID:FBgn0015239 Length:601 Species:Drosophila melanogaster
Sequence 2:XP_002938509.1 Gene:nr2f5 / 100491959 XenbaseID:XB-GENE-486334 Length:398 Species:Xenopus tropicalis


Alignment Length:594 Identity:130/594 - (21%)
Similarity:199/594 - (33%) Gaps:259/594 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 GGTP----LPGGGV----GMGAGASATLSVELCLVCGDRASGRHYGAISCEGCKGFFKRSIRKQL 84
            ||||    .|.|||    .:.:|.....:|: ||||||::||:|||..:|||||.|||||:|:.|
 Frog    32 GGTPQTPTTPKGGVPGQDPVHSGDKGVPNVD-CLVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNL 95

  Fly    85 GYQCRGAMNCEVTKHHRNRCQFCRLQKCLASGMRSDSVQHERKPIVDRKEGIIAAAGSSSTSGGG 149
            .|.|||..:|.:.:||||:||:|||:|||..|||.::||..|.                      
 Frog    96 TYTCRGNRDCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRM---------------------- 138

  Fly   150 NGSSTYLSGKSGYQQGRGKGHSVKAESAATPPVHSAPATA---FNLNENIFPMGLNFAELTQTLM 211
                                              |.|.|:   :.|| |:.|             
 Frog   139 ----------------------------------SHPQTSPGQYTLN-NVDP------------- 155

  Fly   212 FATQQQQQQQQQHQQSGSYSPDIPKADPEDDEDDSMDNSSTLCLQLLANSASNNNSQHLNFNAGE 276
                     ...|.....:...:.:|:|                                     
 Frog   156 ---------YNGHSYLTGFISLLLRAEP------------------------------------- 174

  Fly   277 VPTALPTTSTMGLIQSSLDMRVIHKGLQILQPIQNQLERNGNLSVKPECDSEAEDSGTEDAVDAE 341
                .||:               ..|.|.|||                                 
 Frog   175 ----YPTS---------------RYGAQCLQP--------------------------------- 187

  Fly   342 LEHMELDFECGGNRSGGSDFAINEAVFEQDLLTDVQCAFHVQPPTLVHSYLNIHYVCETGSRIIF 406
                                                           ::.:.|..:||..:|::|
 Frog   188 -----------------------------------------------NNIMGIENICELAARLLF 205

  Fly   407 LTIHTLRKVPVFEQLEAHTQVKLLRGVWPALMAIALAQCQGQLSV-PTIIGQFIQSTRQLADIDK 470
            ..|...:.:|.|...:...||.|||..|..|..:..|||...|.| |.:....:.::...||   
 Frog   206 SAIEWAKNIPFFPDFQLSDQVSLLRMTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSAD--- 267

  Fly   471 IEPLKISKMANLTRTLHDFVQELQSLDVTDMEFGLLRLILLFNPTL-----------LQQRKERS 524
                ::....:..|...:.|::|::|.|...|:..|:.|.||.|..           :|::.:.:
 Frog   268 ----RVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIALFTPDAVGLSDIGHVESIQEKSQCA 328

  Fly   525 LRGYVRRVQLYALSSLRRQGGIGGGEERFNVLVARLLPLSSLDAEAMEELFFANLVGQMQMDALI 589
            |..|||       :....|      ..||..|:.||..|..:.|..:|:|||..|||:..::.||
 Frog   329 LEEYVR-------NQYPNQ------PTRFGRLLLRLPSLRIVSAPVIEQLFFVRLVGKTPIETLI 380

  Fly   590 PFILMTSNT 598
            ..:|::.::
 Frog   381 RDMLLSGSS 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr78NP_001189151.1 NR_DBD_TR2_like 47..133 CDD:143525 47/85 (55%)
NR_LBD_TR2_like 372..595 CDD:132750 57/234 (24%)
nr2f5XP_002938509.1 NR_DBD_COUP_TF 63..135 CDD:143516 44/71 (62%)
NR_LBD_COUP-TF 161..397 CDD:132746 66/385 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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