DRSC/TRiP Functional Genomics Resources

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Protein Alignment Neu2 and zgc:173517

DIOPT Version :9

Sequence 1:NP_649316.1 Gene:Neu2 / 40375 FlyBaseID:FBgn0037085 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_001103999.1 Gene:zgc:173517 / 798270 ZFINID:ZDB-GENE-071004-104 Length:360 Species:Danio rerio


Alignment Length:290 Identity:101/290 - (34%)
Similarity:144/290 - (49%) Gaps:28/290 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 IKAKEKPGFSCSHCPKSFQVKSNLKVHMRSHTGERPFTCSLCPKSFGYSSGLQNHMRTHTGERPF 175
            :|.|:|...:|:.|.||...|.:||.|||.||||:||||:.|.|:|..:|.|::|:|.||.|:|:
Zfish    17 LKRKDKERVTCTQCGKSLTNKQSLKSHMRIHTGEKPFTCTQCGKTFLRASHLKSHLRVHTKEKPY 81

  Fly   176 QCSHCPRSFTAGHHLKAHIQMHERRGSLRCPYCQKCFLTSLILKQHLATHTDETQFKCSQCSKSF 240
            .||.|.:||.....|:.|.::|......:|..|:|.|.|:..||.|...||.|..:.||.|:..|
Zfish    82 PCSVCGKSFKHQRSLRNHQKIHTGVREYKCFECEKTFCTAESLKIHKRIHTGEKPYICSLCNNRF 146

  Fly   241 QVEHELWMHMRVHQ-ERLFTCGHCSKDFALHAYLKRHL-----SRNARCS-------QSSKASAH 292
            .....:..|.|||. |:.:.|.||.|.|:....|::|.     .:..:||       |......|
Zfish   147 NQFAHMKTHARVHTGEKPYKCSHCDKRFSDSGNLRQHEKIHTGEKPYKCSHCDTRFRQLGGLKTH 211

  Fly   293 KTLGHS--KALKCGKCPKTFTDRSALSTHLKSHTKNKPLLEGPCKSSGSKPAHSNAQRK------ 349
            :.: |:  |..||.:|.|||...|.|.:||:.|||.|..   ||...|.......:.|.      
Zfish   212 ERI-HTGEKTHKCDQCGKTFLRASQLKSHLRVHTKKKLY---PCSVCGKNFTRQESLRNHQKIHT 272

  Fly   350 ---PFKCSSCPRTFSRKSALLTHLQTHTGK 376
               .::|..|.:||.|...|..|.:.|||:
Zfish   273 GVGEYRCFECNKTFCRAENLKIHARVHTGE 302

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Neu2NP_649316.1 zf-AD 1..63 CDD:285071
COG5048 <119..241 CDD:227381 51/121 (42%)
C2H2 Zn finger 121..141 CDD:275368 10/19 (53%)
zf-H2C2_2 133..158 CDD:290200 16/24 (67%)
C2H2 Zn finger 149..169 CDD:275368 8/19 (42%)
zf-H2C2_2 162..185 CDD:290200 11/22 (50%)
C2H2 Zn finger 177..197 CDD:275368 7/19 (37%)
C2H2 Zn finger 205..225 CDD:275368 8/19 (42%)
zf-C2H2_8 206..286 CDD:292531 28/92 (30%)
C2H2 Zn finger 233..253 CDD:275368 6/19 (32%)
C2H2 Zn finger 260..297 CDD:275368 11/48 (23%)
C2H2 Zn finger 303..323 CDD:275368 9/19 (47%)
C2H2 Zn finger 353..373 CDD:275368 7/19 (37%)
zgc:173517NP_001103999.1 C2H2 Zn finger 27..47 CDD:275368 10/19 (53%)
COG5048 33..355 CDD:227381 95/274 (35%)
zf-H2C2_2 39..64 CDD:290200 16/24 (67%)
C2H2 Zn finger 55..75 CDD:275368 8/19 (42%)
zf-H2C2_2 67..92 CDD:290200 12/24 (50%)
C2H2 Zn finger 83..103 CDD:275368 7/19 (37%)
C2H2 Zn finger 111..131 CDD:275368 8/19 (42%)
C2H2 Zn finger 139..159 CDD:275368 6/19 (32%)
C2H2 Zn finger 167..187 CDD:275368 7/19 (37%)
zf-H2C2_2 179..204 CDD:290200 4/24 (17%)
C2H2 Zn finger 195..215 CDD:275368 4/20 (20%)
C2H2 Zn finger 223..243 CDD:275368 9/19 (47%)
C2H2 Zn finger 251..271 CDD:275368 3/19 (16%)
C2H2 Zn finger 279..299 CDD:275368 7/19 (37%)
zf-H2C2_2 291..315 CDD:290200 5/12 (42%)
C2H2 Zn finger 307..327 CDD:275368
zf-H2C2_2 319..344 CDD:290200
C2H2 Zn finger 335..355 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000003
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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